FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_GyrBATH23.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_GyrBATH23.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1518
Sequences flagged as poor quality0
Sequence length301
%GC64

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG70.461133069828722No Hit
AGTCCAGCTATGTATATTGGCGACACCTCCGACGGCACGGGCCTGCACCA40.2635046113306983No Hit
AGGCCGGGGATGTACATTGGCGACACCTCCGACGGCACGGGCCTGCACCA30.1976284584980237No Hit
AGGCCAGGAATGTATATAGGCGACACCTCCGACGGCACGGGCCTGCACCA30.1976284584980237No Hit
CGGCCAGGGATGTATATCGGCGACACCTCCGACGGCACGGGCCTGCACCA30.1976284584980237No Hit
CGGCCCGCCATGTATATCGGCGACACCTCCGACGGCACGGGCCTGCACCA30.1976284584980237No Hit
CGACCCGCAATGTATATAGGCGACACCTCCGACGGCACGGGCCTGCACCA30.1976284584980237No Hit
AGGCCAGGCATGTATATTGGCTCGACCGGAGAGCGTGGTCTGCACCACCT30.1976284584980237No Hit
AGTCCGGCAATGTATATCGGCGACACCTCCGACGGCACGGGCCTGCACCA30.1976284584980237No Hit
AGGCCGGGTATGTACATCGGCGACACCTCCGACGGCACGGGCCTGCACCA30.1976284584980237No Hit
AGACCGGGGATGTACATCGGCGACACCTCCGACGGCACGGGCCTGCACCA30.1976284584980237No Hit
AGGCCGGGAATGTATATCGGCTCGACCGGAGAGCGTGGTCTGCACCACCT20.13175230566534915No Hit
AGGCCAGGCATGTATATAGGCTCGACCGGAGAGCGTGGTCTGCACCACCT20.13175230566534915No Hit
AGACCTGCTATGTACATCGGCGACACCGACGACGGTTCGGGCCTGCACCA20.13175230566534915No Hit
AGACCCGCGATGTATATTGGCGACACCTCCGACGGCACGGGCCTGCACCA20.13175230566534915No Hit
CGGCCCGGGATGTATATTGGCGACACCTCCGACGGCACGGGCCTGCACCA20.13175230566534915No Hit
AGACCAGGTATGTACATTGGCTCGACCGGAGAGCGTGGTCTGCACCACCT20.13175230566534915No Hit
AGGCCTGGTATGTACATTGGCGACACCTCCGACGGCACGGGCCTGCACCA20.13175230566534915No Hit
AGGCCGGGGATGTATATTGGCTCCACCGGCGAGCGCGGCCTGCACCACAT20.13175230566534915No Hit
AGGCCTGGGATGTATATTGGCGGTACCGACGAGCGCGCACTGCATCATCT20.13175230566534915No Hit
AGACCTGGAATGTATATCGGCGACACCTCCGACGGCACGGGCCTGCACCA20.13175230566534915No Hit
CGACCGGCGATGTATATCGGCGACACGGGTATCAAGGGCCTCCACCACCT20.13175230566534915No Hit
AGGCCAGGGATGTATATTGGCGACACCTCCGACGGCACGGGCCTGCACCA20.13175230566534915No Hit
AGTCCGGGTATGTATATTGGCGACACCTCCGACGGCACGGGCCTGCACCA20.13175230566534915No Hit
AGGCCAGCTATGTATATCGGCTCGACCGGAGAGCGTGGTCTGCACCACCT20.13175230566534915No Hit
CGGCCTGCCATGTACATCGGCGACACCTCCGACGGCACGGGCCTGCACCA20.13175230566534915No Hit
AGGCCGGGGATGTACATCGGCGACACCTCCGACGGCACGGGCCTGCACCA20.13175230566534915No Hit
AGTCCGGGTATGTACATAGGCGACACCTCCGACGGCACGGGCCTGCACCA20.13175230566534915No Hit
AGACCGGCAATGTATATTGGCGACACCTCCGACGGCACGGGCCTGCACCA20.13175230566534915No Hit
CGCCCAGGAATGTACATCGGCGACACCTCCGACGGCACGGGCCTGCACCA20.13175230566534915No Hit
AGCCCGGGAATGTATATCGGCGACACCTCCGACGGCACGGGCCTGCACCA20.13175230566534915No Hit
CGGCCGGGCATGTACATTGGCGACACCTCCGACGGCACGGGCCTGCACCA20.13175230566534915No Hit
CGGCCCGGTATGTACATCGGCGACACCTCCGACGGCACGGGCCTGCACCA20.13175230566534915No Hit
CGGCCGGGCATGTACATCGGCGACACCTCCGACGGCACGGGCCTGCACCA20.13175230566534915No Hit
AGTCCAGGTATGTATATAGGCGACACCTCCGACGGCACGGGCCTGCACCA20.13175230566534915No Hit
AGTCCGGGCATGTACATCGGCGACACCTCCGACGGCACGGGCCTGCACCA20.13175230566534915No Hit
AGTCCGGGGATGTATATCGGCGACACCTCCGACGGCACGGGCCTGCACCA20.13175230566534915No Hit
AGACCAGGGATGTATATAGGCGACACCTCCGACGGCACGGGCCTGCACCA20.13175230566534915No Hit
AGACCTGCGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG20.13175230566534915No Hit
AGGCCCGGTATGTATATAGGCGACACCTCCGACGGCACGGGCCTGCACCA20.13175230566534915No Hit
AGACCTGGGATGTATATTGGCGACACCTCCGACGGCACGGGCCTGCACCA20.13175230566534915No Hit
AGACCAGGAATGTATATCGGCGACACCTCCGACGGCACGGGCCTGCACCA20.13175230566534915No Hit
AGGCCAGGTATGTATATAGGCGACACCTCCGACGGCACGGGCCTGCACCA20.13175230566534915No Hit
CGGCCTGGGATGTATATCGGCGACACCTCCGACGGCACGGGCCTGCACCA20.13175230566534915No Hit
CGACCAGGTATGTACATTGGCGACACCTCCGACGGCACGGGCCTGCACCA20.13175230566534915No Hit
AGGCCGGGAATGTATATCGGCGACACCTCCGACGGCACGGGCCTGCACCA20.13175230566534915No Hit
AGTCCAGGAATGTATATCGGCGACACCTCCGACGGCACGGGCCTGCACCA20.13175230566534915No Hit
CGGCCTGGGATGTACATCGGCTCGACCGGAGAGCGTGGTCTGCACCACCT20.13175230566534915No Hit
CGGCCTGGGATGTATATTGGCGACACCTCCGACGGCACGGGCCTGCACCA20.13175230566534915No Hit
AGGCCGGGGATGTATATCGGCTCGACCGGTGAGCGGGGCCTGCACCACAT20.13175230566534915No Hit
CGACCGGGTATGTACATAGGCGACACCTCCGACGGCACGGGCCTGCACCA20.13175230566534915No Hit
AGGCCGGCTATGTATATCGGCGACACCTCCGACGGCACGGGCCTGCACCA20.13175230566534915No Hit
CGGCCCGGCATGTACATTGGCGACACCTCCGACGGCACGGGCCTGCACCA20.13175230566534915No Hit
AGCCCTGCGATGTATATCGGCGACACCTCCGACGGCACGGGCCTGCACCA20.13175230566534915No Hit
AGGCCAGCTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG20.13175230566534915No Hit
CGTCCAGCTATGTATATCGGCTCGACCGGAGAGCGTGGTCTGCACCACCT20.13175230566534915No Hit
AGGCCGGGGATGTATATAGGCGACACCTCCGACGGCACGGGCCTGCACCA20.13175230566534915No Hit
AGACCTGGCATGTACATTGGCGACACCTCCGACGGCACGGGCCTGCACCA20.13175230566534915No Hit
CGTCCTGGAATGTATATAGGCGACACCTCCGACGGCACGGGCCTGCACCA20.13175230566534915No Hit
CGGCCCGCGATGTATATCGGCGACACCTCCGACGGCACGGGCCTGCACCA20.13175230566534915No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)