FastQCFastQC Report
Tue 16 Jan 2024
000000000-LC922_l01_n02_ITSChi476.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LC922_l01_n02_ITSChi476.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4726
Sequences flagged as poor quality0
Sequence length301
%GC44

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTTGAAAGT201742.67879813796022No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGT84917.964451967837494No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGAAAGT3868.167583580194668No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTAAAAGT3818.061785865425307No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTAAAGGT1002.1159542953872195No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTAAAAGT811.713922979263648No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGAAAGT731.5446466356326702No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTGAAAGT631.3330512060939483No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTTGAAGGT390.8252221752010156No Hit
CGGCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTTGAAAGT240.5078290308929327No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCATTGTTGAAAGT210.4443504020313161No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTAAAAGT200.4231908590774439No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCATTGTTGAAAGT120.25391451544646637No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTTGGAAGT120.25391451544646637No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTTAAAAGT100.21159542953872196No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGACCCATTGTTGAAAGT100.21159542953872196No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGGGATCCATTGTTGAAAGT100.21159542953872196No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTTGAGAGT90.19043588658484975No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAGGAGATCCATTGTTGAAAGT90.19043588658484975No Hit
CGGCTGCGTTCTTCATCGATGCGAGTTACTTCCTCTAAATGACCAAGCCC80.16927634363097757No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCATTGTTGAAAGT70.14811680067710536No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCGAGAGATCCATTGTTGAAAGT70.14811680067710536No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGCTGAAAGT60.12695725772323319No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTCGAAAGT60.12695725772323319No Hit
CGGCTGCGTTCTTCATCGATGCCGGAACCAAGAGATCCGTTGTTGAAAGT60.12695725772323319No Hit
CGGCTGCGTTCTTCATCGATGCCGGAGCCAAGAGATCCATTGTTGAAAGT60.12695725772323319No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTTGTAAGT60.12695725772323319No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTAAAGGT60.12695725772323319No Hit
CGGCTGCGTTCTTCATTGATGCCAGAGCCAAGAGATCCATTGTTGAAAGT50.10579771476936098No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCTATTGTTGAAAGT50.10579771476936098No Hit
CGGCTGCGTTCTTTATCGATGCCAGAGCCAAGAGATCCATTGTTGAAAGT50.10579771476936098No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGACAGT50.10579771476936098No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCTAGAGATCCATTGTTGAAAGT50.10579771476936098No Hit
TGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTTGAAAGT50.10579771476936098No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCTAAGAGATCCATTGTTGAAAGT50.10579771476936098No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)