FastQCFastQC Report
Tue 16 Jan 2024
000000000-LC922_l01_n02_ITSChi472.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LC922_l01_n02_ITSChi472.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1136
Sequences flagged as poor quality0
Sequence length301
%GC52

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCTGCGTTCTTCATCGATGCTGGAGCCAAGAGATCCGTTGTTAAAAGT36832.3943661971831No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGT33229.225352112676056No Hit
CGGCTGCGTTCTTCATCGATGCGAGTTACTTCCTCTAAATGACCAAGCCC13812.147887323943662No Hit
CGGCTGCGTTCTTCATCGATGCTGCCGACGATTACTTCCTCTAAATGACC282.464788732394366No Hit
CGGCTGCGTTCTTCATCGATGCCGACGATTACTTCCTCTAAATGACCAAG211.8485915492957745No Hit
CGGCTGCGTTCTTCATCGATGCGAGATACTTCCTCTAAATGACCAAGCCC201.7605633802816902No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTGAAAGT121.056338028169014No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTAAAAGT70.6161971830985915No Hit
CGGCTGCGTTCTTCATCGATGCAGTTACTTCCTCTAAATGACCAAGCCCT60.528169014084507No Hit
CGGCTGCGTTCTTCATCGATGCTGGAGCCAAGAGATCCGTTGTCAAAAGT50.44014084507042256No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGGAAGT50.44014084507042256No Hit
CGGCTGCGTTCTTCATCGATGCTGGAGCCAAGAGATCCGTTGTTGAAAGT40.35211267605633806No Hit
CGGCTGCGTTCTTCATCGATGCTGGAGCCAAGAGACCCGTTGTTAAAAGT40.35211267605633806No Hit
CGGCTGCGTCTTCATCGATGCTGGAGCCAAGAGATCCGTTGTTAAAAGTT40.35211267605633806No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGCTGAAAGT30.2640845070422535No Hit
CGGCTGCGTTCTTCATCGATGCAGAACCAAGAGATCCGTTGTTGAAAGTT30.2640845070422535No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGAAAGT30.2640845070422535No Hit
CGGCTGCGTTCTTCATCGATGCGAGAACTTCCTCTAAATGACCAAGCCCT30.2640845070422535No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGGGATCCGTTGTTGAAAGT30.2640845070422535No Hit
CGGCTGCGTTCTTCATCGATGCTGCTTACTTCCTCTAAATGACCAAGCCC30.2640845070422535No Hit
CGGCTGCGTTCTTCATCGATGCAGATACTTCCTCTAAATGACCAAGCCCT30.2640845070422535No Hit
CGGCTGCGTTCTTCATCGATGCGAGTTACTTCCTCTAAATGACCAAGACC30.2640845070422535No Hit
CGGCTGCGTTCTTCATCGATGCTGGAGCCGAGAGATCCGTTGTTAAAAGT20.17605633802816903No Hit
CGGCTGCGTTCTTCATCGAGCTGGAGCCAAGAGATCCGTTGTTAAAAGTT20.17605633802816903No Hit
CGGCTGCGTTCTTCATCGATGCTGGAGCCAAGGGATCCGTTGTTAAAAGT20.17605633802816903No Hit
CGGCTGCGTTCTTCATCGATGCTGGAGCCAAGAGATCCGTTGTTAAGAGT20.17605633802816903No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGATAGT20.17605633802816903No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGACCCGTTGTTGAAAGT20.17605633802816903No Hit
CGGCTGCGTTCTTCATCGATGCCAGGACCAAGAGATCCGTTGTTGAAAGT20.17605633802816903No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGCAAGT20.17605633802816903No Hit
CGGCTGCGTTCTTCATCGATGCCAGAAACAAGAGATCCGTTGTTGAAAGT20.17605633802816903No Hit
CGGCTGCGTTCTTCATCGATGCAAGTTACTTCCTCTAAATGACCAAGCCC20.17605633802816903No Hit
CGGCTGCGTTCTTCATCGATGCTGGAGCCAAGAGATCCGTCGTTAAAAGT20.17605633802816903No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAGGT20.17605633802816903No Hit
CGGCTGCGTTCTTCATCGATGCTGGAGCCAAGAGATCCGTTGTTACAAGT20.17605633802816903No Hit
CGGCTGCGTTCTTCATCGATGCTGGAGCCAAGAGATCCGTTGTTCAAAGT20.17605633802816903No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCGAGAGATCCGTTGTTGAAAGT20.17605633802816903No Hit
CGGCTGCGTTCTCATCGATGCTGGAGCCAAGAGATCCGTTGTTAAAAGTT20.17605633802816903No Hit
CGGCTGCGTTCTTCATCGATGCTGGAGCCAAGAGATCCGTTGTTAGAAGT20.17605633802816903No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTCGAAAGT20.17605633802816903No Hit
TGAGTAACCGCAACATAGTGAAAACACAGTTATCCATACTAGTTAGAGAA20.17605633802816903No Hit
CGGCTGCGTTCTTCATCGATGCTGGAGCCAAGAGATCCGTTGTTAAAGGT20.17605633802816903No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)