FastQCFastQC Report
Tue 16 Jan 2024
000000000-LC922_l01_n02_ITSChi469.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LC922_l01_n02_ITSChi469.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22
Sequences flagged as poor quality0
Sequence length301
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGAAAGT418.181818181818183No Hit
CGGCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTTGAAAGT313.636363636363635No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTGAAAGT313.636363636363635No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGT29.090909090909092No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTAAAAGT29.090909090909092No Hit
TGAGTAACCGCAACATGTAGCCGCTCACCTGCTTGCGGTACTGTTCGTTG14.545454545454546No Hit
CGGCCTCCGTCTTCCTTCCAACCCGGACCAACAGACCCCCTGGTTACAGT14.545454545454546No Hit
CCGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTAAAAG14.545454545454546No Hit
TGAGTAACCGCACCATAGTGAAAACACAGTTATCCATACTGGTTAGAGAA14.545454545454546No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGCTGACAGT14.545454545454546No Hit
TTAGTAACCGCAACATAGTGAAAACACAGTTATCCATACTAGTTAGAGAA14.545454545454546No Hit
CGGCTGCGTTCTTCATCGATGCCCAAGCCAAGAGATCCGTTGTTGAAAGT14.545454545454546No Hit
TGAGTAACCGCAACATAGTGAAAACACAGTTATCCATACTAGTTAGAGAA14.545454545454546No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)