FastQCFastQC Report
Tue 16 Jan 2024
000000000-LC922_l01_n02_ITSChi440.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LC922_l01_n02_ITSChi440.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6386
Sequences flagged as poor quality0
Sequence length301
%GC47

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTAAAAGT300247.0090823676793No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTAAAAGT72211.305981835264642No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGT6109.55214531788287No Hit
CGGCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTTGAAAGT3505.4807391168180395No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGAAAGT3215.026620732853116No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGAAAGT2013.147510178515503No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTGAAAGT1852.896962104603821No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTAAAAGT440.689007203257125No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGCCGAAAGT290.45411838396492327No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGCTAAAAGT220.3445036016285625No Hit
CGGCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTTAAAAGT210.3288443470090824No Hit
CGGCTGCGTTCTTCATCGATGCGGGAGCCAAGAGATCCGTTGTTAAAAGT190.29752583777012215No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGGGATCCGTTGTTAAAAGT160.2505480739116818No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTAAAAGC130.20357031005324147No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGCTGAAAGT130.20357031005324147No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCGAGAGATCCGTTGTTAAAAGT130.20357031005324147No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTAAAGGT130.20357031005324147No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGGTCCGTTGTTAAAAGT120.18791105543376135No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTAAACGT110.17225180081428124No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTAAGAGT110.17225180081428124No Hit
CGGCTGCGTTCTTCATCGATGCAAGAGCCAAGAGATCCGTTGTTAAAAGT90.140933291575321No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTAAAGGT90.140933291575321No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTCGTTAAAAGT90.140933291575321No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTAGAAGT80.1252740369558409No Hit
CGGCTGCGTTCTTCATCGATGCGAGGGCCAAGAGATCCGTTGTTAAAAGT80.1252740369558409No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGCTGTTAAAAGT70.1096147823363608No Hit
CGGCTGCGTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTAAAAGTT70.1096147823363608No Hit
CGGTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTAAAAGTT70.1096147823363608No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTAAAAGT70.1096147823363608No Hit
CAGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTAAAAGT70.1096147823363608No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)