FastQCFastQC Report
Tue 16 Jan 2024
000000000-LC922_l01_n02_ITSATH893.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LC922_l01_n02_ITSATH893.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6585
Sequences flagged as poor quality0
Sequence length301
%GC44

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTTGAAAGT227134.487471526195904No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTAAAAGT193529.38496583143508No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGAAAGT149422.687927107061505No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTAAAAGT630.9567198177676537No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGAAAGT480.7289293849658315No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTAAAAGT460.6985573272589218No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCATTGTTGAAAGT370.5618830675778284No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTGAAAGT340.5163249810174639No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCATTGTTGAAAGT270.4100227790432802No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGT210.31890660592255127No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGGTCCATTGTTGAAAGT120.18223234624145787No Hit
CGGCTGCGTTCTTCATCGATGCCAGGGCCAAGAGATCCATTGTTGAAAGT90.1366742596810934No Hit
CGGCTGCGTTCTTCATCGATGCGAGGGCCAAGAGATCCGTTGTTAAAAGT90.1366742596810934No Hit
CGGCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTTGAAAGT80.12148823082763857No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCGAGAGATCCATTGTTGAAAGT80.12148823082763857No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTACAAGT80.12148823082763857No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGGGATCCGTTGTTAAAAGT80.12148823082763857No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAGGAGATCCATTGTTGAAAGT80.12148823082763857No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGAACGT70.10630220197418376No Hit
CGGCTGCGTTCTTCATCGATGCGCGAGCCAAGAGATCCGTTGTTGAAAGT70.10630220197418376No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGGGATCCATTGTTGAAAGT70.10630220197418376No Hit
CGGCTGCGTTCTTTATCGATGCCAGAGCCAAGAGATCCATTGTTGAAAGT70.10630220197418376No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCGAGAGATCCGTTGTTAAAAGT70.10630220197418376No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)