FastQCFastQC Report
Tue 16 Jan 2024
000000000-LC922_l01_n02_ITSATH892.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LC922_l01_n02_ITSATH892.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences85
Sequences flagged as poor quality0
Sequence length301
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCTGCGTTCTTCATCGATGCTGCCGACGATTACTTCCTCTAAATGACC7082.35294117647058No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGT22.3529411764705883No Hit
CGGCTGCGTTCTTCATCGATGCTGCCGCCGATTACTTCCTCTAAATGACC22.3529411764705883No Hit
TGAGTAACCGCAACATAGTGAAAACACAGTTATCCATACTAGTTAGAGAA22.3529411764705883No Hit
CGGCTGCGTTCCATCGCTGCTGCCGACGATTACTTCCTCTAAATGACCAA11.1764705882352942No Hit
TGAGTACCCGCAACATAGTGAAAACACAGTTATCCATACTAGTTAGAGAA11.1764705882352942No Hit
CGGTTGCGTTCTTCATCGATGCTGCCGACGATTACTTCCTCTAAATGACC11.1764705882352942No Hit
CGCTGCGTTCTTCATCGATGCTGCCGACGATTACTTCCTCTAAATGACCA11.1764705882352942No Hit
CTTTCTTATCAACAGCCGGCCTCTACTTCTCGCGTTTCGTCTTTTATTTC11.1764705882352942No Hit
CGGCTGCGTTCTTATCGATGCTGCCGACGATTACTTCCTCTAAATGACCA11.1764705882352942No Hit
CGGCTGCCGTTCTTCATCGATGCTGCCGACGATTACCTCCTCTAAATGAC11.1764705882352942No Hit
ACTCCATGGAGTCCGCCCGATGCCGCGTACGAACCGCCGCCGAACTTGCC11.1764705882352942No Hit
CGGCTGCGTCTTCATCGATGCTGCCGACGATTACTTCCTCTAAATGACCA11.1764705882352942No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)