FastQCFastQC Report
Tue 16 Jan 2024
000000000-LC922_l01_n02_ITSATH333.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LC922_l01_n02_ITSATH333.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7885
Sequences flagged as poor quality0
Sequence length301
%GC44

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTTGAAAGT463158.731769181991126No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGAAAGT7219.143944197844007No Hit
CGGCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTTGAAAGT6047.66011414077362No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGAAAGT5206.594800253646163No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTAAAAGT1001.2682308180088777No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGT971.2301838934686111No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTGAAAGT720.9131261889663919No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCATTGTTGAAAGT310.39315155358275206No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGACCCATTGTTGAAAGT270.342422320862397No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCGAGAGATCCATTGTTGAAAGT240.3043753963221306No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGGGATCCATTGTTGAAAGT230.29169308814204187No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGGTCCATTGTTGAAAGT230.29169308814204187No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTAAAAGT230.29169308814204187No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAGGAGATCCATTGTTGAAAGT220.27901077996195306No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTTGAAGGT210.2663284717818643No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTTGGAAGT190.24096385542168677No Hit
CGGCTGCGTTCTTCATCGATGCCAGGGCCAAGAGATCCATTGTTGAAAGT190.24096385542168677No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGCTGAAAGT180.22828154724159797No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTGAAACT170.2155992390615092No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTTGAGAGT160.20291693088142043No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTCGAAAGT150.19023462270133165No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCACTGTTGAAAGT150.19023462270133165No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCATTGTTGAAAGT140.17755231452124287No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTTGCAAGT140.17755231452124287No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATCGTTGAAAGT130.1648700063411541No Hit
CGGCTGCGTTCTTCATCGATGCCGGAGCCAAGAGATCCATTGTTGAAAGT120.1521876981610653No Hit
CGGCTGCGTTCTTTATCGATGCCAGAGCCAAGAGATCCATTGTTGAAAGT100.12682308180088775No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTAAAAGT100.12682308180088775No Hit
CGGCTGCGTTCTTCATCGATGCCAAAGCCAAGAGATCCATTGTTGAAAGT90.11414077362079898No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTTGAAAGC90.11414077362079898No Hit
CGGCTGCGTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTTGAAAGTT80.10145846544071022No Hit
CGGCTGCGTTCTTCATCGATGTCAGAGCCAAGAGATCCATTGTTGAAAGT80.10145846544071022No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCTAAGAGATCCATTGTTGAAAGT80.10145846544071022No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)