FastQCFastQC Report
Tue 16 Jan 2024
000000000-LC922_l01_n02_ITSATH323.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LC922_l01_n02_ITSATH323.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2842
Sequences flagged as poor quality0
Sequence length301
%GC49

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGAAAGT201170.76002814919072No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTAAAAGT2569.00774102744546No Hit
CGGCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTTGAAAGT612.1463757916959887No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTGAAAGT561.9704433497536946No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGT291.0204081632653061No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTAAAAGT291.0204081632653061No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGAAGGT140.49261083743842365No Hit
CGGCTGCGTTCTTCATCGATGCCGGAGCCAAGAGATCCGTTGTTGAAAGT110.38705137227304715No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGGGATCCGTTGTTGAAAGT110.38705137227304715No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGCTGTTGAAAGT100.3518648838845883No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTCGTTGAAAGT100.3518648838845883No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGACCCGTTGTTGAAAGT90.3166783954961295No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCGAGAGATCCGTTGTTGAAAGT80.28149190710767064No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTCGAAAGT80.28149190710767064No Hit
CGGCTGCGTTCTTCATCGATGCCAGGGCCAAGAGATCCGTTGTTGAAAGT80.28149190710767064No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAGGAGATCCGTTGTTGAAAGT70.24630541871921183No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGAGAGT70.24630541871921183No Hit
CGGCTGTGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGAAAGT70.24630541871921183No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGGTCCGTTGTTGAAAGT60.211118930330753No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGCTGAAAGT60.211118930330753No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGGAAGT60.211118930330753No Hit
TGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGAAAGT50.17593244194229415No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGAAAGT50.17593244194229415No Hit
CGGCTGCGTCCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGAAAGT40.14074595355383532No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGAACGT40.14074595355383532No Hit
CGGTTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGAAAGT40.14074595355383532No Hit
CGGCTGCGTTCTTCATTGATGCCAGAGCCAAGAGATCCGTTGTTGAAAGT40.14074595355383532No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGCAAGT30.1055594651653765No Hit
CGGCTGCGTTCTTCATCGATGCTGGAACCAAGAGATCCGTTGTTGAAAGT30.1055594651653765No Hit
GGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGAAAGTT30.1055594651653765No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTATTGAAAGT30.1055594651653765No Hit
CGGCTGCGTTCTTCATCGACGCCAGAGCCAAGAGATCCGTTGTTGAAAGT30.1055594651653765No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGAAAGC30.1055594651653765No Hit
CGGCTGCGTTCTTCATAGATGCCAGAGCCAAGAGATCCGTTGTTGAAAGT30.1055594651653765No Hit
CGGCTGCGTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGAAAGTT30.1055594651653765No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCTAAGAGATCCGTTGTTGAAAGT30.1055594651653765No Hit
CGGCTGCGTTCCTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGAAAGT30.1055594651653765No Hit
CGGCTGCGTTCTTCATCGATGTCAGAGCCAAGAGATCCGTTGTTGAAAGT30.1055594651653765No Hit
CGGCTGCGCTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGAAAGT30.1055594651653765No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)