FastQCFastQC Report
Tue 16 Jan 2024
000000000-LC922_l01_n02_ITSATH316.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LC922_l01_n02_ITSATH316.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5854
Sequences flagged as poor quality0
Sequence length301
%GC44

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGAAAGT323355.22719508028698No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTAAAAGT100817.218995558592415No Hit
CGGCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTTGAAAGT4086.969593440382645No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTGAAAGT3505.978817902289033No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTAAAAGT771.3153399385035873No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGGTCCGTTGTTGAAAGT180.30748206354629315No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGAAAGT170.29039972668261016No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGAACGT160.2733173898189272No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGAAAGC140.23915271609156133No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGACAGT130.2220703792278784No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGGGATCCGTTGTTGAAAGT130.2220703792278784No Hit
CGGCTGCGTTCTTCATCGATGCGCGAGCCAAGAGATCCGTTGTTGAAAGT120.20498804236419543No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGT120.20498804236419543No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGGAAGT120.20498804236419543No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTCGTTGAAAGT120.20498804236419543No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCGAGAGATCCGTTGTTGAAAGT110.18790570550051247No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTCGAAAGT110.18790570550051247No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGAAGGT110.18790570550051247No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGCTGTTGAAAGT110.18790570550051247No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGACCCGTTGTTGAAAGT110.18790570550051247No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTTGAAAGT100.17082336863682954No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGCTGAAAGT90.15374103177314657No Hit
CGGCTGTGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGAAAGT90.15374103177314657No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGCAAGT90.15374103177314657No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAGGAGATCCGTTGTTGAAAGT90.15374103177314657No Hit
CGGCTGAGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGAAAGT80.1366586949094636No Hit
CGGCTGCGTTCTTCATCGATGCGCAGGCCAAGAGATCCGTTGTTGAAAGT80.1366586949094636No Hit
CGGCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTTAAAAGT80.1366586949094636No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGCTGTTAAAAGT70.11957635804578066No Hit
CGGCTGCGTTCTTCATAGATGCGCAAGCCAAGAGATCCGTTGTTGAAAGT70.11957635804578066No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGACAAGAGATCCGTTGTTGAAAGT70.11957635804578066No Hit
CGGCTGCGTTCTTCATCGATGCGCGAACCAAGAGATCCGTTGTTGAAAGT70.11957635804578066No Hit
CGGCTGCGTTCTTCATCGATGCGCGAGCCAAGAGATCCGTTGTTAAAAGT70.11957635804578066No Hit
CGGCCGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGAAAGT60.10249402118209772No Hit
CGGCTGCGTTCTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGAAAGTT60.10249402118209772No Hit
CGGCTGCGTTCTTCATCGATGTGCAAGCCAAGAGATCCGTTGTTGAAAGT60.10249402118209772No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCGAGAGATCCGTTGTTAAAAGT60.10249402118209772No Hit
CGGCTGCGTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGAAAGTT60.10249402118209772No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)