FastQCFastQC Report
Tue 16 Jan 2024
000000000-LC922_l01_n02_ITSATH292.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LC922_l01_n02_ITSATH292.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5552
Sequences flagged as poor quality0
Sequence length301
%GC49

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCTGCGTTCTTCATCGATGCTAGAACCAAGAGATCCGTTGTTAAAAGT208137.48198847262248No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGT205737.049711815561956No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTAAAAGT3416.14193083573487No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTAAAAGT1522.7377521613832854No Hit
CGGCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTTGAAAGT821.4769452449567724No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGAAAGT550.9906340057636888No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTGAAAGT490.8825648414985591No Hit
CGGCTGCGTTCTTCATCGATGCTAGAACCAAGAGATCCGTTGTTGAAAGT420.7564841498559077No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGAAAGT360.6484149855907781No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGCTGAAAGT160.2881844380403458No Hit
CGGCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTTAAAAGT140.2521613832853026No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTTGAAAGT90.16210374639769454No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCTAGAGATCCGTTGCTAAAAGT80.1440922190201729No Hit
CGGCTGCGTTCTTCATCGATGCTAGAACCAAGGGATCCGTTGTTAAAAGT80.1440922190201729No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGCCGAAAGT80.1440922190201729No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCATTGTTGAAAGT70.1260806916426513No Hit
CGGCTGCGTTCTTCATCGATGCTAGAACCAAGAGGTCCGTTGTTAAAAGT70.1260806916426513No Hit
CGGCTGCGTTCTTCATCGATGCTAGAACCAAGAGATCCGTTGTTAAAGGT70.1260806916426513No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGACCCGTTGTTGAAAGT70.1260806916426513No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAGGT70.1260806916426513No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCGAGAGATCCGTTGTTGAAAGT70.1260806916426513No Hit
CGGCTGCGTTCTTCATCGATGCTAGAACCAAGAGATCCGTTGTTAAACGT70.1260806916426513No Hit
CGGCTGCGTTCTTCATCGATGCTAGGACCAAGAGATCCGTTGTTAAAAGT70.1260806916426513No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGCTGTTGAAAGT60.10806916426512969No Hit
CAGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGT60.10806916426512969No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGACAGT60.10806916426512969No Hit
CGGCTGCGTTCTTCATCGATGCTAGAACCAAGAGATCTGTTGTTAAAAGT60.10806916426512969No Hit
CGGCTGCGTTCTTCATCGATGCCGGAACCAAGAGATCCGTTGTTGAAAGT60.10806916426512969No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)