FastQCFastQC Report
Tue 16 Jan 2024
000000000-LC922_l01_n02_ITSATH289.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LC922_l01_n02_ITSATH289.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6613
Sequences flagged as poor quality0
Sequence length301
%GC47

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGAAAGT163724.754271888704068No Hit
CGGCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTTGAAAGT109216.512929079086646No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCATTGTTGAAAGT86113.019809466202933No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGT81912.384696809314985No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTAAAAGT6389.647663692726448No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTTGAAAGT3335.035536065325873No Hit
CGGCTGCGTTCTTCATCGATGCTGGAACCAAGAGATCCGTTGTTGAAAGT1001.5121729925903522No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTGAAAGT731.1038862845909572No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGAAAGT580.8770603357024044No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGCCGAAAGT570.8619386057765008No Hit
CGGCTGCGTTCTTCATCGATGCTAGAACCAAGAGATCCGTTGTTGAAAGT420.6351126568879479No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTAAAAGT270.4082867079993951No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTAAAAGT150.22682594888855284No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCATTGCTGAAAGT130.19658248903674577No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGCTGAAAGT120.18146075911084228No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGGGATCCGTTGTTGAAAGT110.16633902918493876No Hit
CGGCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCATTGTTGAAAGT110.16633902918493876No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGGTCCGTTGTTGAAAGT100.15121729925903524No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCATTGTTGAAAGT100.15121729925903524No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTAAAAGT100.15121729925903524No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCATTGTTGAAAGT90.13609556933313172No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGCAAGT90.13609556933313172No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCATTGTTGAACGT80.1209738394072282No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCGAGAGATCCGTTGTTGAAAGT80.1209738394072282No Hit
CGGCTGCGTTCTTCATCGATGCGCGAGCCAAGAGATCCGTTGTTGAAAGT70.10585210948132466No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTCGAAAGT70.10585210948132466No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAGGAGATCCATTGTTGAAAGT70.10585210948132466No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGGGATCCGTTGTTGAAAGT70.10585210948132466No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGACAGT70.10585210948132466No Hit
CGGCTGCGTTCTTCATCGATGCGAGAACCAAGGGATCCGTTGTTGAAAGT70.10585210948132466No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGGAAGT70.10585210948132466No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)