FastQCFastQC Report
Tue 16 Jan 2024
000000000-LC922_l01_n02_ITS-OOChi746.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LC922_l01_n02_ITS-OOChi746.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences72
Sequences flagged as poor quality0
Sequence length301
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCCTAGACATCCACTGCTGGTCTCGTGGTAATGATCCTTCCGCTGTCTC3650.0No Hit
AGCCTAGACATCCACTGCTGCCGACGAGTGGTAATGATCCTTCCGCTGTC1318.055555555555554No Hit
AGCCTAGACATCCACTGCTGACGAGTGGTAATGATCCTTCCGCTGTCTCT79.722222222222223No Hit
AGCCTAGACATCCACTGCTGTCTCGTGGTAATGATCCTTCCGCTGTCTCT56.944444444444445No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTGTGGATTAAAACCAAGACTTT34.166666666666666No Hit
TGAGTAACCGCAACATAGTGAAAACACAGTTATCCATACTAGTTAGAGAA22.7777777777777777No Hit
AGCCTAGACATCCACTGCTGCTCTCGTGGTAATGATCCTTCCGCTGTCTC11.3888888888888888No Hit
ACCCCCCCCCCCCCTCCCCCACCCTTGCACGCGTCCGCTCCGCCCTTCCC11.3888888888888888No Hit
AGCCTAGACATCCACTGCTGCCGACGAGTGGTAATGATCCTTCAGCGGTT11.3888888888888888No Hit
AGCCTAGACATCCACTGCTGTCTCGTGGTAATGAACCTTCCGCTGTCTCT11.3888888888888888No Hit
AGCCTAGACATCCACTGCTTGTCTCGTGGTAATGATCCTTCCGCTGTCTC11.3888888888888888No Hit
AGCCTAGAAATCCACTGCTGCCGACGAGTGGTAATGATCCTTCCGCTGTC11.3888888888888888No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)