FastQCFastQC Report
Tue 16 Jan 2024
000000000-LC922_l01_n02_ITS-OOChi725.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LC922_l01_n02_ITS-OOChi725.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2948
Sequences flagged as poor quality0
Sequence length301
%GC46

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTTAAAAGCAGAGACT129944.06377204884668No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAAGTAGAGACT69723.643147896879242No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAAAGCAAGGACTT2117.157394843962008No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAAGCAAGGACT632.1370420624151967No Hit
AGCCTAGACATCCACTGCTGTTCGTGGTAATGATCCTTCCGCTGTCTCTT602.03527815468114No Hit
AGCCTAGACATCCACTGCTGGTCTCGTGGTAATGATCCTTCCGCTGTCTC471.5943012211668928No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGCAGAGAC431.4586160108548167No Hit
AGCCTAGACATCCACTGCTGTGGTAATGATCCTTCCGCTGTCTCTTATAC250.8480325644504748No Hit
AGCCTAGACATCCACTGCTGGCGTCAGATGTGGTAATGATCCTTCCGCTG190.644504748982361No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAAGCAGAGACT190.644504748982361No Hit
AGCCTAGACATCCACTGCTGAGAGTTGCTATCTAGTTAAAAGCAGAGACT150.508819538670285No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTTAAAAGTAGAGACT140.47489823609226595No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTTAAAAGCAGGGACT100.33921302578018997No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAAGTAGGGACT80.27137042062415195No Hit
AGCCTAGACATCCACTGCTGGAAGTTGCTATCTAGTTAAAAGCAGAGACT80.27137042062415195No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGCTAAAAGCAGAGACT80.27137042062415195No Hit
AGCCTAGAAATCCACTGCTGAAAGTTGCTATCTAGTTAAAAGCAGAGACT60.20352781546811397No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCCATCTAGTTAAAAGCAGAGACT60.20352781546811397No Hit
AGCCTAGACATCCACTGCTGAAGGTTGCTATCTAGTTAAAAGCAGAGACT60.20352781546811397No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTTAAAAGCGGAGACT50.16960651289009498No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTGGTTAAAAGCAGAGACT50.16960651289009498No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTGTCTAGTTAAAAGCAGAGACT50.16960651289009498No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTGGTTAAAAGCAAGGACT50.16960651289009498No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTTAAAAGCAGAGACC50.16960651289009498No Hit
AGCCTAGACATCAACTGCTGAAAGTTGTTATCTAGTTAAAAGTAGAGACT50.16960651289009498No Hit
AGCATAGACATCCACTGCTGAAAGTTGCTATCTAGTTAAAAGCAGAGACT40.13568521031207598No Hit
AGACTAGACATCCACTGCTGAAAGTTGCTATCTAGTTAAAAGCAGAGACT40.13568521031207598No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTTACAAGCAGAGACT40.13568521031207598No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATTTAGTTAAAAGCAGAGACT40.13568521031207598No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCCAGTTAAAAGCAGAGACT40.13568521031207598No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTTAAACGCAGAGACT40.13568521031207598No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAGGTAGAGACT40.13568521031207598No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGCTAAAAGTAGAGACT40.13568521031207598No Hit
AGCCTAGACATACACTGCTGAAAGTTGCTATCTAGTTAAAAGCAGAGACT40.13568521031207598No Hit
AGCCTAGACATACACTGCTGAAAGTTGTTATCTAGTTAAAAGTAGAGACT30.10176390773405698No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAAGCAGGGACT30.10176390773405698No Hit
TGAGTAACCGCAACATAGTGAACGGCTATTCGACGCTGACTCATCCTGTC30.10176390773405698No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTGTCTAGTTAAAAGTAGAGACT30.10176390773405698No Hit
AGCCTAGACATCCACTGCTGAGAGTTGTTATCTAGTTAAAAGTAGAGACT30.10176390773405698No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTCAAAAGCAGAGACT30.10176390773405698No Hit
AGCCTAGACATACACTGCTGAAAGTTGTTATCTAGTAAAAGCAAGGACTT30.10176390773405698No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTTAAAGGCAGAGACT30.10176390773405698No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTTAAAAGCAGAGGCT30.10176390773405698No Hit
AGCCTAGACATCCATTGCTGAAAGTTGCTATCTAGTTAAAAGCAGAGACT30.10176390773405698No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTACCTAGTTAAAAGCAGAGACT30.10176390773405698No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTCATCTAGTTAAAAGTAGAGACT30.10176390773405698No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTCAAAAGTAGAGACT30.10176390773405698No Hit
AGCCTAGACATCCACTGCTAAAAGTTGCTATCTAGTTAAAAGCAGAGACT30.10176390773405698No Hit
AGCCTAGACATCCACTGCTGAAAGTCGCTATCTAGTTAAAAGCAGAGACT30.10176390773405698No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAGAGTAGAGACT30.10176390773405698No Hit
AGCCTAGACATCCACTGCTGAAAGCTGCTATCTAGTTAAAAGCAGAGACT30.10176390773405698No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)