FastQCFastQC Report
Tue 16 Jan 2024
000000000-LC922_l01_n02_ITS-OOChi713.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LC922_l01_n02_ITS-OOChi713.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences142
Sequences flagged as poor quality0
Sequence length301
%GC45

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCCTAGACATCCACTGCTGCCGACGAGTGGTAATGATCCTTCCGCTGTC3423.943661971830984No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAAAGCAAGGACTT1913.380281690140844No Hit
AGCCTAGACATCCACTGCTGTTCGCTCAGATGTGGTAATGATCCTTCCGC1812.676056338028168No Hit
AGCCTAGACATCCACTGCTGTCTCGTGGTAATGATCCTTCCGCTGTCTCT1611.267605633802818No Hit
AGCCTAGACATCCACTGCTGTGTGGTAATGATCCTTCCGCTGTCTCTTAT149.859154929577464No Hit
AGCCTAGACATCCACTGCTGTGGTAATGATCCTTCCGCTGTCTCTTATAC139.15492957746479No Hit
AGCCTAGACATCCACTGCTAAAAGTTGTTATCTAGTAAAAGCAAGGACTT21.4084507042253522No Hit
AGCCTAGACATCCACTGCTGCCGACGTGTGGTAATGATCCTTCCGCTGTC21.4084507042253522No Hit
AGCCTAGACATCCACTGCTGCCGACGAGTGGTAATGATACTTCCGCGGTC10.7042253521126761No Hit
AGCCTAGACATCCACTGCTGTTCGCTCAGATGTAGTAATGATCCTTCCGC10.7042253521126761No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAAACCAAGGACTT10.7042253521126761No Hit
AGCCTAGACATCCACTGCTGCCGACGAGTGGTAATGAGCCTTCCGCTGTC10.7042253521126761No Hit
AGCCTAGACATACACTGCTGTCTCGTGGTAATGATCCTTCCGCTGACTCT10.7042253521126761No Hit
AGCCCAGACATCCACTGCTGAAAGTTGTTATCTAGTAAAAGCAAGGACTT10.7042253521126761No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAAAGCAAGGACTA10.7042253521126761No Hit
TGAGTAACCTCAACATAGTGAAAACACAGTTATCCATACTAGTTAGAGAA10.7042253521126761No Hit
AGCCTAGACATCCACTGCTGCCGACGAGTGGTAATGTGCCTTCAGTGTTC10.7042253521126761No Hit
AGCCTAGACATCCACTGCTGTGGTAAGGATCCTTCCGCTGTCTCTTATAC10.7042253521126761No Hit
AGCCTAGACATCCACTGCTGTGTGGTAATGATCCTTCCGCTTTCTCTTAT10.7042253521126761No Hit
CGCCTAGACATCACATCGTGTGGTAATGATCCTTCCGCTGTCTACTATAC10.7042253521126761No Hit
AGCCTAGACATCCACTGCTGTCGCCGAGTGGTAATGCCCCTTCCCCTGTC10.7042253521126761No Hit
AGCCTAGACATCAACTGCTGTGGTAATGATCCTTCCGCTGTCTCTTATAA10.7042253521126761No Hit
AGCCTAGACATCCACTGCTGCCGACGAGTGGTAATGATCCTTCCGCTGTA10.7042253521126761No Hit
AGCCTAGACATCACTGCTGCCGACGAGTGGTAATGATCCTTCCGCTGTCT10.7042253521126761No Hit
AGCCTAGACATCCACTGCTGTGTGGTAATGATCCTTCCGCTGTATCTTAT10.7042253521126761No Hit
AGCCTAGACATCCACTGCTGCCGACGAGTGGTAATGATCCTTCAGCTGTC10.7042253521126761No Hit
AGCCTAGATGTGTATAAGAGACAGAGCCTAGACATCCACTGCTGTGGTAA10.7042253521126761No Hit
AGCCTAGACATCCACTGCTGTTTCGTGGTAATGATCCTTCCGCTGTCTCT10.7042253521126761No Hit
AGCCTAGACATCCACTGCTGTAAGTTGTTATCTAGTAAAAGCAAGGACTT10.7042253521126761No Hit
AGCCTAGACATCCACTGCTGTGGTAATGATCCTTCCGCTGTTCTCTTATA10.7042253521126761No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTGTAAATAAAAGCAAGGACTTT10.7042253521126761No Hit
AGCCTAGACATCCACTGCTGCCGACGAGTGGTAATGATCCTTCCGCGGTC10.7042253521126761No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)