FastQCFastQC Report
Tue 16 Jan 2024
000000000-LC922_l01_n02_ITS-OOChi689.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LC922_l01_n02_ITS-OOChi689.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10392
Sequences flagged as poor quality0
Sequence length301
%GC43

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCCTAGACATCCACTGCTGAAAGTTTGTGGAAGTAAACGCAAAAACTTT771874.26866820631255No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGTAGAGAC7327.043879907621248No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTTAAAAGCAGAGACT1421.3664357197844497No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAAGCAAGGACT540.5196304849884527No Hit
AGCCTAGACATCCACTGCTGAGAGTTTGTGGAAGTAAACGCAAAAACTTT460.44264819091608926No Hit
AGCCTAGACATCCACTGCTGAAAGTTTGTGGAAGTAAACGCAAAAACCTT450.4330254041570438No Hit
AGCCTAGACATCCACTGCTGAAAGTTTGTGGAAGTAAACGCAGAAACTTT440.4234026173979984No Hit
AGCCTAGACATCCACTGCTGAAAGTTTGTGGAAGTAAACGCAAAAACTTC430.4137798306389531No Hit
AGCCTAGACATCCACTGCTGAAAGTTTGTGGAGGTAAACGCAAAAACTTT380.3656658968437259No Hit
AGCCTAGACATCCACTGCTGAAAGTTTGTGGAAGTGAACGCAAAAACTTT370.3560431100846805No Hit
AGCCTAGACATCCACTGCTGAAAGTTTGCGGAAGTAAACGCAAAAACTTT350.3367975365665897No Hit
AGCCTAGACATCCACTGCTGAAAGCTTGTGGAAGTAAACGCAAAAACTTT350.3367975365665897No Hit
AGCCTAGACATCCACTGCTGAAGGTTTGTGGAAGTAAACGCAAAAACTTT340.32717474980754424No Hit
AGCCTAGACATCCACTGCTGAAAGTTTGTGGAAGTAAGCGCAAAAACTTT340.32717474980754424No Hit
AGCCTAGACATCCACTGCTGAAAGTTCGTGGAAGTAAACGCAAAAACTTT320.30792917628945343No Hit
AGCCTAGACATCCACTGCTGAAAGTCTGTGGAAGTAAACGCAAAAACTTT320.30792917628945343No Hit
AGCCTAGACATCCACTGCTGAAAGTTTGTGGAAGTAAACGCAAGAACTTT310.298306389530408No Hit
AGCCTAGACATCCACTGCTGAAAGTTTGTGGAAGTAAACGCGAAAACTTT310.298306389530408No Hit
AGCCTAGACATACACTGCTGAAAGTTTGTGGAAGTAAACGCAAAAACTTT290.27906081601231714No Hit
AGCCTAGACATCCACTGCTGAAAGTTTGTGGAAGTAAACGCAAAAACTCT290.27906081601231714No Hit
AGCCTAGACATCCACTGCTGAAAGTTTGTGGAAGTAAACGCAAAGACTTT290.27906081601231714No Hit
AGCCTAGACATCCACTGCTGAAAGTTTGTGGGAGTAAACGCAAAAACTTT290.27906081601231714No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGCAGAGAC270.25981524249422633No Hit
AGCCTAGACATCCACTGCTGAAAGTTTGTGGAAGTAGACGCAAAAACTTT250.2405696689761355No Hit
AGCCTAGACATCCACTGCTGGAAGTTTGTGGAAGTAAACGCAAAAACTTT250.2405696689761355No Hit
AGCCTAGACATCAACTGCTGAAAGTTTGTGGAAGTAAACGCAAAAACTTT250.2405696689761355No Hit
AGCCTAGACATCCACTGCTGAAAGTTTGTGGAAGTAAACGCAAAAGCTTT230.22132409545804463No Hit
AGCCTAGACATCCACTGCTGAAAGTTTATGGAAGTAAACGCAAAAACTTT200.1924557351809084No Hit
AGACTAGACATCCACTGCTGAAAGTTTGTGGAAGTAAACGCAAAAACTTT180.17321016166281755No Hit
AGCCTAGACATCCACTGCTGAAAGTTTGTAGAAGTAAACGCAAAAACTTT180.17321016166281755No Hit
AGCCTAGAAATCCACTGCTGAAAGTTTGTGGAAGTAAACGCAAAAACTTT170.16358737490377212No Hit
AGCCTAGATATCCACTGCTGAAAGTTTGTGGAAGTAAACGCAAAAACTTT150.14434180138568128No Hit
AGCATAGACATCCACTGCTGAAAGTTTGTGGAAGTAAACGCAAAAACTTT150.14434180138568128No Hit
AGCCTAGACATCCACTGCTGAAAGTTTGTGGAAGTAAACACAAAAACTTT140.13471901462663588No Hit
CGCCTAGACATCCACTGCTGAAAGTTTGTGGAAGTAAACGCAAAAACTTT140.13471901462663588No Hit
AGCCTAGACATCCACTGCTGAAAGTTTGTGGAAGCAAACGCAAAAACTTT130.12509622786759045No Hit
AGCCTAGACATCTACTGCTGAAAGTTTGTGGAAGTAAACGCAAAAACTTT120.11547344110854503No Hit
AGCCTAGACATCCACTGCTGGATGTGGTAATGATCCTTCCGCTGTCTCTT110.1058506543494996No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTAAAAGCAGGGACTT110.1058506543494996No Hit
AGCCTAGACATCCACTGTTGAAAGTTTGTGGAAGTAAACGCAAAAACTTT110.1058506543494996No Hit
AGCCTAGACATCCACTGCTGAAAGTTTGTGGAAGTAAACGTAAAAACTTT110.1058506543494996No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)