FastQCFastQC Report
Tue 16 Jan 2024
000000000-LC922_l01_n02_GyrBChi141.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LC922_l01_n02_GyrBChi141.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1441
Sequences flagged as poor quality0
Sequence length301
%GC72

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACTCCGTGGAGGCCGCCTGACACCTTGTACGCATTGTCGTCCGACGTGTT30.2081887578070784No Hit
ACTCCGTGTAGGCCGCCCGACACCTTGTACGCATTGTCGTCCGACGTGTT30.2081887578070784No Hit
ACACCGTGTAAACCGCCGGATGCCGCGTACGAACCGCCGCCGAACTTGCC20.13879250520471895No Hit
ACGCCGTGAAGGCCTCCCGAGACCTTGTAGCTGTTCTGGTTGAACTTGCC20.13879250520471895No Hit
ACGCCATGGAGGCCTCCCGACACCTTGTAGCCGCCGCCGCCGAACTTGCC20.13879250520471895No Hit
ACACCGTGGAGGCCGCCTGACACCTTGTACGCATTGTCGTCCGACGTGTT20.13879250520471895No Hit
ACGCCATGGAAGCCGCCGGAGACCTTGTACCCGCCGCCGCCGAACTTGCC20.13879250520471895No Hit
ACACCGTGTAAGCCGCCCGACACCTTGTACGCATTGTCGTCCGACGTGTT20.13879250520471895No Hit
ACACCGTGGAGACCGCCTGACACCTTGTAGGCGTTGCCGCTGTCGTCGGT20.13879250520471895No Hit
ACACCGTGCAGGCCGCCGGAGACCTTGTAGCCGCCGCCGCCGAACTTGCC20.13879250520471895No Hit
ACTCCGTGGAGGCCACCCGACACCTTGTACGCATTGTCGTCCGACGTGTT20.13879250520471895No Hit
ACGCCGTGGAGACCTCCCGACACCTTGTACGCATTGTCGTCCGACGTGTT20.13879250520471895No Hit
ACTCCGTGTAGGCCGCCCGAGACCTTGTAGCTGTTCTGGTTGAACTTGCC20.13879250520471895No Hit
ACGCCGTGCAGGCCACCCGACACCTTGTACGCATTGTCGTCCGACGTGTT20.13879250520471895No Hit
ACTCCGTGGAAGCCGCCCGACACCTTGTAGCCGCCGCCGCCGAACTTGCC20.13879250520471895No Hit
ACTCCATGGAGTCCGCCTGACACCGCGTAGGAGTCCGAGTCGAACTTGCC20.13879250520471895No Hit
ACGCCGTGGAGGCCTCCTGACACCTTGTACGCATTGTCGTCCGACGTGTT20.13879250520471895No Hit
ACTCCGTGGAGGCCGCCCGATGCCGCGTACGAACCGCCGCCGAACTTGCC20.13879250520471895No Hit
ACACCGTGGAGGCCTCCGGACACCTTGTACGCATTGTCGTCCGACGTGTT20.13879250520471895No Hit
ACCCCATGAAGGCCGCCGGATGCCGCGTACGAACCGCCGCCGAACTTGCC20.13879250520471895No Hit
ACGCCGTGGAGGCCTCCCGACACCTTGTAGCCGCCTCCGCCGAACTTTCC20.13879250520471895No Hit
ACCCCATGGAGGCCTCCCGAGACCTTGTAGCTGTTCTGGTTGAACTTGCC20.13879250520471895No Hit
ACGCCGTGGAATCCGCCTGAGACCTTGTAGCCGCCGCCGCCGAACTTGCC20.13879250520471895No Hit
ACTCCGTGCAGGCCGCCCGACACCTTGTAGCCGCCGCCGCCGAACTTGCC20.13879250520471895No Hit
ACTCCGTGAAGGCCTCCTGAGACCTTGTAGCTGTTCTGGTTGAACTTGCC20.13879250520471895No Hit
ACTCCGTGTAGGCCACCGGAGACCTTGTAGCTGTTCTGGTTGAACTTGCC20.13879250520471895No Hit
ACCCCATGGAGGCCGCCCGACACCTTGTAGCCGCCGCCGCCGAACTTGCC20.13879250520471895No Hit
ACGCCGTGGAGTCCGCCGGATGCCGCGTACGAACCGCCGCCGAACTTGCC20.13879250520471895No Hit
ACTCCGTGGAAGCCGCCCGAGACCTTGTACGCGTTCTCGTCGTTGGTGTT20.13879250520471895No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)