FastQCFastQC Report
Tue 16 Jan 2024
000000000-LC922_l01_n02_GyrBChi122.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LC922_l01_n02_GyrBChi122.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3845
Sequences flagged as poor quality0
Sequence length301
%GC70

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACGCCGTGGAGACCGCCGGAGACCTTGTAGCTGTTCTGGTTGAACTTGCC60.15604681404421328No Hit
ACGCCATGGAGGCCGCCCGAGACCTTGTAGCTGTTCTGGTTGAACTTGCC60.15604681404421328No Hit
ACGCCGTGGAGGCCGCCCGAGACCTTGTAGCTGTTCTGGTTGAACTTGCC50.13003901170351106No Hit
ACGCCGTGCAGGCCGCCCGAGACCTTGTAGCTGTTCTGGTTGAACTTGCC50.13003901170351106No Hit
ACTCCGTGGAGGCCGCCTGAGACCTTGTAGCTGTTCTGGTTGAACTTGCC40.10403120936280884No Hit
ACGCCGTGGAAGCCGCCGGAGACCTTGTAGCTGTTCTGGTTGAACTTGCC40.10403120936280884No Hit
ACCCCATGAAGGCCGCCCGAGACCTTGTAGCTGTTCTGGTTGAACTTGCC40.10403120936280884No Hit
ACGCCGTGGAGGCCGCCGGATGCCGCGTACGAACCGCCGCCGAACTTGCC40.10403120936280884No Hit
ACACCGTGCAGGCCGCCGGAGACCTTGTAGCTGTTCTGGTTGAACTTGCC40.10403120936280884No Hit
ACGCCGTGGAGGCCGCCTGAGACCTTGTACGCGTTCTCGTCGTTGGTGTT40.10403120936280884No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)