FastQCFastQC Report
Tue 16 Jan 2024
000000000-LC922_l01_n01_ITSDve536.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LC922_l01_n01_ITSDve536.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3665
Sequences flagged as poor quality0
Sequence length301
%GC48

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG180049.113233287858115No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTG71619.536152796725784No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTG60816.5893587994543No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCATAACAAGGTTTCCGTAGGTG2075.648021828103684No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTTGGTG180.49113233287858116No Hit
GCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGA110.30013642564802184No Hit
GGCTTGGTCATTTAGAGGAAGTAAAGGTCGTAACAAGGTTTCCGTAGGTG100.2728512960436562No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTAACCGTAGGTG90.24556616643929058No Hit
GGATTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG70.19099590723055934No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGCCGTAACAAGGTCTCCGTAGGTG70.19099590723055934No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGCG70.19099590723055934No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTTCGTAGGTG60.1637107776261937No Hit
GGCTTGGTCATTTAGAGGAAGTAAGAGTCGTAACAAGGTTTCCGTAGGTG60.1637107776261937No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGCCGTAACAAGGTTTCCGTAGGTG50.1364256480218281No Hit
GGCTTGGTTATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTG40.10914051841746249No Hit
GGCTCGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG40.10914051841746249No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACGAGGTTTCCGTAGGTG40.10914051841746249No Hit
GGCTTGGTTATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG40.10914051841746249No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCCCCGTAGGTG40.10914051841746249No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTGACAAGGTTTCCGTAGGTG40.10914051841746249No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGCAGGTG40.10914051841746249No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTA40.10914051841746249No Hit
GGCTTGGCCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTG40.10914051841746249No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)