FastQCFastQC Report
Tue 16 Jan 2024
000000000-LC922_l01_n01_ITSChi475.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LC922_l01_n01_ITSChi475.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5947
Sequences flagged as poor quality0
Sequence length301
%GC44

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG394866.38641331763915No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCATAACAAGGTTTCCGTAGGTG126321.23759878930553No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTG1202.0178241129981505No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAGCAAGGTTTCCGTAGGTG210.3531192197746763No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGCG200.3363040188330251No Hit
GGCTTGGTCATTTAGAGGAAGTAAAGGTCGTAACAAGGTTTCCGTAGGTG190.3194888178913738No Hit
GCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGA170.28585841600807127No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACGAGGTTTCCGTAGGTG160.26904321506642004No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCAGTAGGTG140.23541281318311755No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGCTTCCGTAGGTG140.23541281318311755No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGCAGGTG120.20178241129981506No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTGGGTG120.20178241129981506No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTG120.20178241129981506No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAGGGTTTCCGTAGGTG110.18496721035816377No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTGACAAGGTTTCCGTAGGTG100.16815200941651254No Hit
GGCTTGGTCATTTAGAGGAAGTAAGAGTCGTAACAAGGTTTCCGTAGGTG100.16815200941651254No Hit
GGCTTGGTAATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG80.13452160753321002No Hit
GGCTTGGTTATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG80.13452160753321002No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGCCGTAACAAGGTTTCCGTAGGTG80.13452160753321002No Hit
GATGAGTCAGCGTCGAACATGCAACATTTATTGCATGATACGTGGCATTT80.13452160753321002No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTCCCGTAGGTG80.13452160753321002No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCATAACAAGGTCTCCGTAGGTG70.11770640659155877No Hit
GGCTTGGTCATTTAGAGGAAGTAAGAGTCATAACAAGGTTTCCGTAGGTG70.11770640659155877No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCATAACAAGGCTTCCGTAGGTG70.11770640659155877No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTTGTAACAAGGTTTCCGTAGGTG70.11770640659155877No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTTCGTAGGTG70.11770640659155877No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCATAACAAGGTTTCCGCAGGTG70.11770640659155877No Hit
GGCTCGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG60.10089120564990753No Hit
GCTTGGTCATTTAGAGGAAGTAAAAGTCATAACAAGGTTTCCGTAGGTGA60.10089120564990753No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCATAACAAGGTTCCCGTAGGTG60.10089120564990753No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCATAGCAAGGTTTCCGTAGGTG60.10089120564990753No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)