FastQCFastQC Report
Tue 16 Jan 2024
000000000-LC922_l01_n01_ITSChi472.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LC922_l01_n01_ITSChi472.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1136
Sequences flagged as poor quality0
Sequence length301
%GC49

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTG38934.24295774647887No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTG24921.919014084507044No Hit
GGCTTGGTCATTTAGAGGAAGTAACTCGCATCGATGAAGAACGCAGCCGC14012.323943661971832No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG11810.387323943661972No Hit
GGCTTGGTCATTTAGAGGAAGTAATCGTCGGCAGCATCGATGAAGAACGC292.552816901408451No Hit
GGCTTGGTCATTTAGAGGAAGTAATCGTCGGCATCGATGAAGAACGCAGC221.936619718309859No Hit
GGCTTGGTCATTTAGAGGAAGTATCTCGCATCGATGAAGAACGCAGCCGC211.8485915492957745No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAGGGTTTCCGTAGGTG110.9683098591549295No Hit
GGCTTGGTCATTTAGAGGAAGTAACTGCATCGATGAAGAACGCAGCCGCT70.6161971830985915No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGCTGGTG40.35211267605633806No Hit
GGCTTGGTCATTTAGAGGAAGTAAAGGTCGTAACAAGGTCTCCGTTGGTG40.35211267605633806No Hit
GATGAGTCAGCGTCGAACATGCAACATTTATTGCATGATACGTGGCATTT30.2640845070422535No Hit
GGCTTGGTCATTTAGAGGAAGTTCTCGCATCGATGAAGAACGCAGCCGCT30.2640845070422535No Hit
GCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTGA30.2640845070422535No Hit
GGCTTGGTCATTTAGAGGAAGTATCTGCATCGATGAAGAACGCAGCCGCT30.2640845070422535No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGCCGTAACAAGGTCTCCGTTGGTG30.2640845070422535No Hit
GGCTTGGTCATTTAGAGGAAGTAAGCAGCATCGATGAAGAACGCAGCCGC30.2640845070422535No Hit
GCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGA30.2640845070422535No Hit
GGCTTGGTCATTTAGAGGAAGTAACTTGCATCGATGAAGAACGCAGCCGC20.17605633802816903No Hit
GGCTTGGTCATTTAGAGGAAGTAAAGGTCGTAACAAGGTCTCCGTAGGTG20.17605633802816903No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGCCTCCGTTGGTG20.17605633802816903No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGCCGTAACAAGGTTTCCGTAGGTG20.17605633802816903No Hit
GGCTTGGTCATTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTGA20.17605633802816903No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGCCGTAACAAGGTCTCCGTAGGTG20.17605633802816903No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACGAGGTCTCCGTTGGTG20.17605633802816903No Hit
GGATTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTG20.17605633802816903No Hit
GGCTTGGTCATATAGAGGAAGTAACTCGCATCGATGAAGAACGCAGCCGC20.17605633802816903No Hit
GGCTTGGTCATTTAGAGGAAGTAAAGTCGTAACAAGGTTTCCGTAGGTGA20.17605633802816903No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGCG20.17605633802816903No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTATCAAGGTCTCCGTTGGTG20.17605633802816903No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)