FastQCFastQC Report
Tue 16 Jan 2024
000000000-LC922_l01_n01_ITSChi471.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LC922_l01_n01_ITSChi471.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1334
Sequences flagged as poor quality0
Sequence length301
%GC51

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTG48536.356821589205396No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTG23917.916041979010494No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAGGGTCTCCGTAGGTG1299.67016491754123No Hit
GGCTTGGTCATTTAGAGGAAGTAACTCGCATCGATGAAGAACGCAGCCGC1239.22038980509745No Hit
GGCTTGGTCATTTAGAGGAAGTAATCGTCGGCAGCATCGATGAAGAACGC705.247376311844078No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG695.172413793103448No Hit
GGCTTGGTCATTTAGAGGAAGTAATCGTCGGCATCGATGAAGAACGCAGC292.1739130434782608No Hit
GGCTTGGTCATTTAGAGGAAGTATCTCGCATCGATGAAGAACGCAGCCGC161.199400299850075No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGCG70.5247376311844079No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAGGGTCTCCGTAGGCG60.4497751124437781No Hit
GGATTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTG40.29985007496251875No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTGACAAGGTCTCCGTAGGTG40.29985007496251875No Hit
GGCTTGGTCATTTAGAGGAAGTACTCGCATCGATGAAGAACGCAGCCGCT30.22488755622188905No Hit
GATGAGTCAGCGTCGAACATGCAACATTTATTGCATGATACGTGGCATTT30.22488755622188905No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTTGTAACAAGGTCTCCGTAGGTG30.22488755622188905No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGCCGTAACAAGGTCTCCGTAGGTG30.22488755622188905No Hit
GCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTGA30.22488755622188905No Hit
GGCTTGGTCATTTAGAGGAAGTAAAGGTCGTAACAAGGTCTCCGTAGGTG20.14992503748125938No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAGAGTCTCCGTAGGTG20.14992503748125938No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAGGGTTTCCGTAGGTG20.14992503748125938No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGCCTCCGTTGGTG20.14992503748125938No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTTGTAACAGGGTCTCCGTAGGTG20.14992503748125938No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCCCCGTAGGTG20.14992503748125938No Hit
GCTTGGTCATTTAGAGGAAGTAATCGTCGGCAGCATCGATGAAGAACGCA20.14992503748125938No Hit
GGCTTGGTCATTTAGAGGAGGTAAAAGTCGTAACAGGGTCTCCGTAGGTG20.14992503748125938No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTGCGTTGGTG20.14992503748125938No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAGCAAGGTCTCCGTAGGTG20.14992503748125938No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGCCGTAACAGGGTCTCCGTAGGTG20.14992503748125938No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTCCCGTAGGTG20.14992503748125938No Hit
GACTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTG20.14992503748125938No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAGGGTCCCCGTAGGTG20.14992503748125938No Hit
GGCTTGGTCATTTAGAGGAAGTAATCGTCGGAGCATCGATGAAGAACGCA20.14992503748125938No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGCCTCCGTAGGTG20.14992503748125938No Hit
GGCTTGGTCATTTAGAGGAAGTAATCGCATCGATGAAGAACGCAGCCGCT20.14992503748125938No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)