FastQCFastQC Report
Tue 16 Jan 2024
000000000-LC922_l01_n01_ITSChi440.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LC922_l01_n01_ITSChi440.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6386
Sequences flagged as poor quality0
Sequence length301
%GC46

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTTGGTCATTTAGAGGAAGTAAAAGTCATAACAAGGTTTCCGTAGGTG289145.270905104917006No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG189629.68994675853429No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTG87913.76448481052302No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCATAACAAGGTCTCCGTAGGTG250.39148136548700285No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTG180.281866583150642No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCATAACGAGGTTTCCGTAGGTG170.2662073285311619No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCATAACAAGGCTTCCGTAGGTG170.2662073285311619No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCATAACAAGGTTTCCATCGGCA160.2505480739116818No Hit
GGCTTGGTCATTTAGAGGAAGTAAAGGTCGTAACAAGGTTTCCGTAGGTG150.23488881929220168No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGCCATAACAAGGTTTCCGTAGGTG150.23488881929220168No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACGAGGTTTCCGTAGGTG140.2192295646727216No Hit
GCTTGGTCATTTAGAGGAAGTAAAAGTCATAACAAGGTTTCCGTAGGTGA140.2192295646727216No Hit
GGCTTGGTCATTTAGAGGAAGTAAAGGTCATAACAAGGTTTCCGTAGGTG130.20357031005324147No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCATAACAAGGTTTCCGTAGGCG130.20357031005324147No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCATAACAGGGTTTCCGTAGGTG120.18791105543376135No Hit
GGCTTGGTCATTTAGAGGAAGTAAGAGTCATAACAAGGTTTCCGTAGGTG110.17225180081428124No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTTGGTG110.17225180081428124No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCATAACAAGGTTTCTGTAGGTG100.15659254619480112No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCATAGCAAGGTTTCCGTAGGTG100.15659254619480112No Hit
GCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGA100.15659254619480112No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCATAACAAGGTTTCCGTGGGTG90.140933291575321No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCATAACAAGGTTCCCGTAGGTG80.1252740369558409No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAGGGTTTCCGTAGGTG80.1252740369558409No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGCG80.1252740369558409No Hit
GGCTCGGTCATTTAGAGGAAGTAAAAGTCATAACAAGGTTTCCGTAGGTG70.1096147823363608No Hit
GGATTGGTCATTTAGAGGAAGTAAAAGTCATAACAAGGTTTCCGTAGGTG70.1096147823363608No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTTGTAACAAGGTTTCCGTAGGTG70.1096147823363608No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)