FastQCFastQC Report
Tue 16 Jan 2024
000000000-LC922_l01_n01_ITSChi434.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LC922_l01_n01_ITSChi434.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9071
Sequences flagged as poor quality0
Sequence length301
%GC52

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTG581364.08334252011906No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG121813.427406019182008No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCATAACAAGGTTTCCGTAGGTG106911.784808731121155No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCATAACAAGGTCTCCGTAGGTG440.48506228640723187No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAGCAAGGTCTCCGTAGGTG380.41891742916988206No Hit
GCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTGA350.38584500055120713No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGCG280.3086760004409657No Hit
GGCTTGGTCATTTAGAGGAAGTAAAGGTCGTAACAAGGTCTCCGTAGGTG250.27560357182229084No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCCCCGTAGGTG250.27560357182229084No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAGGGTCTCCGTAGGTG240.2645794289493992No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACGAGGTCTCCGTAGGTG240.2645794289493992No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGCCGTAACAAGGTCTCCGTAGGTG240.2645794289493992No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGCCTCCGTAGGTG230.25355528607650757No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGCAGGTG220.24253114320361593No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGCAACAAGGTCTCCGTAGGTG180.1984345717120494No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTGGGTG170.18741042883915773No Hit
GGCTTGGTCATTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTGA110.12126557160180797No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTGACAAGGTCTCCGTAGGTG110.12126557160180797No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)