FastQCFastQC Report
Tue 16 Jan 2024
000000000-LC922_l01_n01_ITSChi414.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LC922_l01_n01_ITSChi414.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4539
Sequences flagged as poor quality0
Sequence length301
%GC47

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTG214047.14694866710729No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG117425.864727913637363No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCATAACAAGGTTTCCGTAGGTG65814.4965851509143No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTG731.6082837629433795No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTTGGTG170.37453183520599254No Hit
GCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTGA160.35250055078211057No Hit
GGCTTGGTCATTTAGAGGAAGTAAAGGTCGTAACAAGGTCTCCGTTGGTG110.24234412866270105No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGCAACAAGGTCTCCGTTGGTG100.2203128442388191No Hit
GGCTTGGTCATTTAGAGGAAGTAAAGGTCGTAACAAGGTTTCCGTAGGTG100.2203128442388191No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTCGGTG80.17625027539105528No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGCCTCCGTTGGTG80.17625027539105528No Hit
GGCTTGGTCATTTAGAGGAAGTAAGAGTCGTAACAAGGTCTCCGTTGGTG80.17625027539105528No Hit
GGCTTGGTAATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTG80.17625027539105528No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCCCCGTTGGTG80.17625027539105528No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTTCGTAGGTG80.17625027539105528No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGCG80.17625027539105528No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAGCAAGGTCTCCGTTGGTG80.17625027539105528No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACGAGGTCTCCGTTGGTG70.15421899096717337No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGCCGTAACAAGGTTTCCGTAGGTG70.15421899096717337No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCAGTAGGTG70.15421899096717337No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAGGGTTTCCGTAGGTG60.13218770654329146No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGCG60.13218770654329146No Hit
GCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGA60.13218770654329146No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTGACAAGGTCTCCGTTGGTG50.11015642211940956No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCATAACAAGGTCTCCGTTGGTG50.11015642211940956No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTA50.11015642211940956No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGCTTCCGTAGGTG50.11015642211940956No Hit
GGCTTGGTCATTTAGAGGAAGTAAGAGTCGTAACAAGGTTTCCGTAGGTG50.11015642211940956No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)