FastQCFastQC Report
Tue 16 Jan 2024
000000000-LC922_l01_n01_ITSATH359.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LC922_l01_n01_ITSATH359.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences64
Sequences flagged as poor quality0
Sequence length301
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTTGGTCATTTAGAGGAAGTAATCGTCGGCAGCATCGATGAAGAACGC3046.875No Hit
GGCTTGGTCATTTAGAGGAAGTAACTCGCATCGATGAAGAACGCAGCCGC1726.5625No Hit
GATGAGTCAGCGTCGAACATGCAACATTTATTGCATGATACGTGGCATTT914.0625No Hit
GGCTTGGTCATTTAGAGGAAGTAATCGTTGGCAGCATCGATGAAGAACGC11.5625No Hit
GGCTTGGTCATTTAGAGGAAGTAACTCGCATCGATGTTTTACGCTGCCGC11.5625No Hit
AGCTTGGTCATTTAGAGGAAGTAATCGTCGGCAGCATCGATGAAGAACGC11.5625No Hit
GGCTTGGTCATTTAGAGGAAGTAACTCGCATCGATGAAGAACGCACCGCT11.5625No Hit
GATGAGTCAGCGTCGAACATGCAACATTTATTGCATGTTACGTGGCATTT11.5625No Hit
GGCTTGGTCATTTAGAGGAAGTAACTCGCATCGATGAAGAACGCAGCTGC11.5625No Hit
GGCTCGGTCATTTAGAGGAAGTAACTCGCATCGATGAAGAACGCAGCCGC11.5625No Hit
GATGAGTCAGCGTCGAACCACCACGGGTAACGATGCTGCCACCCGCGTTG11.5625No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)