FastQCFastQC Report
Tue 16 Jan 2024
000000000-LC922_l01_n01_ITS-OODve849.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LC922_l01_n01_ITS-OODve849.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences103
Sequences flagged as poor quality0
Sequence length301
%GC43

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTAAGCA2928.155339805825243No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTAGGCTCTGTC1413.592233009708737No Hit
CGGAAGGATCATTACCACGTCGTCGGCAGCAGTGGATGTCTAGGCTCTGT98.737864077669903No Hit
GATGAGTCAGCGTCGAACATGCAACATTTATTGCATGATACGTGGCATTT76.796116504854369No Hit
CGGAAGGATCATTACCACTGCAGCAGTGGATGTCTAGGCTCTGTCTCTTA43.8834951456310676No Hit
CGGAAGGATCATTAACACCCAGCAGTGGATGTCTAGGCTCTGTCTCTTAT32.912621359223301No Hit
CGGAAGGATCATTACCACCTGAGGCCGCGACAGCAGTGGATGTCTAGGCT21.9417475728155338No Hit
CGGAAGGATCATTACCACACAAAAAAACTATCCACGTGAACCGTTAAGCA21.9417475728155338No Hit
CGGAAGGATCATTACCACATCTGACGTGCCCAGCAGTGGATGTCTAGGCT21.9417475728155338No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT21.9417475728155338No Hit
CGGAAGGATCATTACCACCCAGCAGTGGATGTCTAGGCTCTGTCTCTTAT21.9417475728155338No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC21.9417475728155338No Hit
CAGTGGATGTCTAGGCTCTGTCTCTTATACACATCTCCGAGCCCACGAGA10.9708737864077669No Hit
CGGAAGGATCATTACCGCGTCGTCGGCAGCGTCAGCAGTGGATGTCTAGG10.9708737864077669No Hit
CGGAAGGATCATTACCACATCTCCGAGCCCACGAGACAGCAGTGGATGTC10.9708737864077669No Hit
CGGAAGGATCATTACCACTCGTCCGCAGCAGTGGATGTCTAGGCTCTGTC10.9708737864077669No Hit
CGGAAGGATCATTACCACACCAATAAACTATCCACGTGAAACGTTAAGCA10.9708737864077669No Hit
CGGAAGGATCATTACCACATCTGACGTGCGCGACAGCAGTGGATGTCTAG10.9708737864077669No Hit
CGGAAGGATCATTACCACTGCAGCAGTGGATGTCTAGGGTCTGTCTCTTA10.9708737864077669No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACTGTCTGGTA10.9708737864077669No Hit
CGGAAGGATCATTAACACATCTGAGCTGCCGACAGCAGTGGATGTCTAGG10.9708737864077669No Hit
CGGAAGGATCATTACAACATCTCCGAGCCCACGAGACAACGCTGAATCTC10.9708737864077669No Hit
CGGAAGGATCATTACCACATCTGACGCAGCAGTGGATGTCTAGGCTCTGT10.9708737864077669No Hit
CGGAAGGATCATTACCACATCTGACGCTGGCTACAGCAGTGGATGTCTAG10.9708737864077669No Hit
CGGAAGGAATCATTACCACACCAAAAAACTATCCACGTGAACCGTTAAGC10.9708737864077669No Hit
CGTCCAGGCATGTATATAGGGTCCACCGGTCCGGCCGGCCTGCACCACCT10.9708737864077669No Hit
CGGAAGGATCATTACCATCCAGCAGTGGATGTCTAGGCTCTGTCTCTTAT10.9708737864077669No Hit
TGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTAAGCA10.9708737864077669No Hit
CGGAAGGATCATTACCACTGACGCTGCAGCAGTGGATGTCTAGGCTCTGT10.9708737864077669No Hit
CGGAAGGATCATTACCAGCAGTGGATGTCTAGGCTCTGTCTCTATACACA10.9708737864077669No Hit
CGGAAGGATCATTACCACTCCGAGCCCACGAGACAACGCTGAATCTCGTA10.9708737864077669No Hit
CAGTGGATGTCTCGGCTCTGTCTCTTATACACATCTCCGAGCCCACGAGA10.9708737864077669No Hit
GATTAGTCAGCGTAGAACATGCAACATTTATTGCATGATACGTGGCATTT10.9708737864077669No Hit
CGGAAGGATCATTACCACGTCTTCGGCAGCAGTGGATGTCTAGGCTCTGT10.9708737864077669No Hit
CGGAAGGATCATTACCACGTCGTCGGCAGCGTCAGCAGTGGGTGTCTAGG10.9708737864077669No Hit
CGGAAGGATCATTACCACACCCAAAAAATTTTCCACGGAAACCTTATTAC10.9708737864077669No Hit
CGGAAGGATCATTACCCCTCGTCGGCCGCAGTGGATGTCTAGGCTCTGTC10.9708737864077669No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)