FastQCFastQC Report
Tue 16 Jan 2024
000000000-LC922_l01_n01_ITS-OODve840.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LC922_l01_n01_ITS-OODve840.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2202
Sequences flagged as poor quality0
Sequence length301
%GC42

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC65529.745685740236148No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT40818.52861035422343No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCACGTGAATTGTTACAATA31314.214350590372387No Hit
CGGAAGGATCATTACCACACTTTAAAAAACTGTCCACGTGAACTGTAAGC713.224341507720254No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTTCACGTGAACCGTATCAAC612.7702089009990916No Hit
CGGAAGGATCATTACCACGAGACCAGCAGTGGATGTCTAGGCTCTGTCTC431.952770208900999No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGTGAACCGTCAGAAAT401.8165304268846505No Hit
CGGAAGGATCATTACCACATCTCGAGCCACGAGACCAGCAGTGGATGTCT241.08991825613079No Hit
CGGAAGGATCATTACCACTCACCCACCAGCAGTGGATGTCTAGGCTCTGT231.0445049954586738No Hit
CGGAAGGATCATTACCACTCGTCGTCAGCAGTGGATGTCTAGGCTCTGTC210.9536784741144414No Hit
CGGAAGGATCATTACCACATCGTCGGCAGCAGTGGATGTCTAGGCTCTGT200.9082652134423252No Hit
CGGAAGGATCATTACCACACCAAAAAAACTATCCACGTGAACCGTCAAAA180.8174386920980926No Hit
CGGAAGGATCATTACCACATCCAGCAGTGGATGTCTAGGCTCTGTCTCTT160.7266121707538601No Hit
CGGAAGGATCATTACCACATCAGCAGTGGATGTCTAGGCTCTGTCTCTTA150.6811989100817438No Hit
CGGAAGGATCATTACCACATCTCCGAGCCCAGAGACCCAGCAGTGGATGT110.49954586739327883No Hit
CGGAAGGATCATTACCACACCAAATACCCATCCACGTGAACGATTGAACT100.4541326067211626No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGCGAACCACTTTGTAT90.4087193460490463No Hit
CGGAAGGATCATTAACACACCTAAAAACTTTCCACGTGAACCGTATCAAC90.4087193460490463No Hit
CGGAAGGATCATTACCACATCGTCAGCAGTGGATGTCTAGGCTCTGTCTC80.36330608537693004No Hit
CGGAAGGATCATTACCACACCAAAAACTATACACGTGAACCACTTTGTAT70.31789282470481384No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAGCCGTATCAAC70.31789282470481384No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAATTGTTACAAT70.31789282470481384No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCACTTTGTA70.31789282470481384No Hit
CGGAAGGATCATTACCACCTAAAAACTTTCCACGTGAACCGTATCAACAA60.2724795640326975No Hit
CGGAAGGATCATTACCACACCTAAAAACTTCCCACGTGAACCGTATCAAC60.2724795640326975No Hit
CGGAAGGATCATTACCACCTAAAACTATCCACGTGAATTGTTACAATATG60.2724795640326975No Hit
CGGAAGGATCATTACCACACCGAAAACTATCCACGTGAACCACTTTGTAT60.2724795640326975No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAGC50.2270663033605813No Hit
CGGAAGGATCATTACCACGAGACACGACACCAGCAGTGGATGTCTAGGCT50.2270663033605813No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAGCCACTTTGTAT50.2270663033605813No Hit
CGGAAGGATCATTACCACCAAAAACTATCCACGTGAACCACTTTGTATTG50.2270663033605813No Hit
CGGAAGGATCATTACCACACATAAAAACTTTCCACGTGAACCGTATCAAC50.2270663033605813No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACTGTATCAAC50.2270663033605813No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACAACTTTGTAT40.18165304268846502No Hit
CGGAAGGATCATTAACACACCTAAAACTATCCACGTGAATTGTTACAATA40.18165304268846502No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTCCACGTGAACCGTATCAAC40.18165304268846502No Hit
CGGAAGGATCATTACCACATCTCCGAGCCCAGCAGTGGATGTCTAGGCTC40.18165304268846502No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA40.18165304268846502No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAAACGTATCAAC40.18165304268846502No Hit
CGGAAGGATCATTAACACACCAAAAACTATCCACGTGAACCACTTTGTAT40.18165304268846502No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTACCAAC40.18165304268846502No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCACGTGAATCGTTACAATA40.18165304268846502No Hit
CGGAAGGATCATTACCACACCAAAAACTACCCACGTGAACCACTTTGTAT30.13623978201634876No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCACGTGAACCACTTTGTAT30.13623978201634876No Hit
CGGAAGGATCATTACCACACCTAAAACTTTCCACGTGAACCGTATCAACA30.13623978201634876No Hit
CGGAAGGATCATTACCACACCTAAAAACTCTCCACGTGAACCGTATCAAC30.13623978201634876No Hit
CGGAAGGATCATTACCACGCCTAAAAACTTTCCACGTGAACCGTATCAAC30.13623978201634876No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGGACCGTATCAAC30.13623978201634876No Hit
CGGAAGGATCATACCACACCTAAAACTATCCACGTGAATTGTTACAATAT30.13623978201634876No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTTAACCGTATCAAC30.13623978201634876No Hit
CGGAAGGATCATTACCACACCCAAAAACTTTCCACGTGAACCGTATCAAC30.13623978201634876No Hit
CGGAAGGATCATTACCACACCTAAAACTACCCACGTGAATTGTTACAATA30.13623978201634876No Hit
CGGAAGGATCATTACCACACCAAAACTTTTATATATTTTGTGAATGAATT30.13623978201634876No Hit
CGGAAGGATCATTACCACACCTAAAAGCTTTCCACGTGAACCGTATCAAC30.13623978201634876No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACATGAACCGTATCAAC30.13623978201634876No Hit
CGGAAGGATCATTACCACACCTAAAACTATACACGTGAATTGTTACAATA30.13623978201634876No Hit
CGGAAGGATCATTACCACACATAAAAACTTTTCACGTGAACCGTATCAAC30.13623978201634876No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)