FastQCFastQC Report
Tue 16 Jan 2024
000000000-LC922_l01_n01_ITS-OODve829.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LC922_l01_n01_ITS-OODve829.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3152
Sequences flagged as poor quality0
Sequence length301
%GC48

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCAAAAACAATCCACGTGAACCGTCAGAAAT145346.097715736040605No Hit
CGGAAGGATCATTACCACACCAAAAAAAACTTTCCACGTGAACCGTTGTA3099.803299492385786No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTAAACA2919.232233502538072No Hit
CGGAAGGATCATTACCACACCAAAAAAACTATCCACGTGAACCGTCAAAA2096.630710659898477No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTCAAAAA501.5862944162436547No Hit
CGGAAGGATCATTACCACACCATAAAACTTTCCACGTGAACCGTTGTAAA381.2055837563451777No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAATCTGTACTG260.8248730964467006No Hit
CGGAAGGATCATTACCACACCCAAAAACTTTCCACGTGAACCGTTGTAAT230.7296954314720813No Hit
CGGAAGGATCATTACCACGCCAAAAACTATCCACGTGAACCGTTAACCAA200.6345177664974619No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTTCCACGTGAACCGTTGTAA190.6027918781725888No Hit
CGGAAGGATCATTACCACACCAAAAAAAACTATCCACGTGAACCGTCAAA150.4758883248730965No Hit
CGGAAGGATCATTACCACACCAAAAAAAGCTTTCCACGTGAACCGTTGTA150.4758883248730965No Hit
CGGAAGGATCATTACCACGCCAAAAACTATCCACGTGAACCGTTAATCAA140.4441624365482234No Hit
CGGAAGGATCATTACCACCAAAAACAATCCACGTGAACCGTCAGAAATAG130.4124365482233503No Hit
CGGAAGGATCATTACCACACAAAAAACAATCCACGTGAACCGTCAGAAAT130.4124365482233503No Hit
CGGAAGGATCATTACCACACCAAAAAAAAACTTTCCACGTGAACCGTTGT120.3807106598984772No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGTGAACCGTTAAACAA120.3807106598984772No Hit
CGGAAGGATCATTACCACACCGAAAACAATCCACGTGAACCGTCAGAAAT90.28553299492385786No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGTGAACCGTCGGAAAT90.28553299492385786No Hit
CGGAAGGATCATTACCACATCTCCCCAGCAGTGGATGTCTAGGCTCTGTC90.28553299492385786No Hit
CGGAAGGATCATTAACACACCAAAAAACTATCCACGTGAACCGTTAAACA80.25380710659898476No Hit
CGGAAGGATCATTACCACACCAAAAACAATACACGTGAACCGTCAGAAAT80.25380710659898476No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTAGGCTCTGTC80.25380710659898476No Hit
CGGAAGGATCATTAACACACCAAAAACAATCCACGTGAACCGTCAGAAAT80.25380710659898476No Hit
CGGAAGGATCATTACCACACCAAAAACAGTCCACGTGAACCGTCAGAAAT80.25380710659898476No Hit
CGGAAGGATCATTACCACGTCGTCGTCAGCAGTGGATGTCTAGGCTCTGT70.2220812182741117No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGTGAACAGTCAGAAAT70.2220812182741117No Hit
CGGAAGGATCATTACCACACAGCAGTGGATGTCTAGGCTCTGTCTCTTAT70.2220812182741117No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGTGAACCGTCATAAAT70.2220812182741117No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGTGAACCGTCAAAAAA60.1903553299492386No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGCGAACCGTCAGAAAT60.1903553299492386No Hit
CGGAAGGATCATTACCACACCAGAAACAATCCACGTGAACCGTCAGAAAT60.1903553299492386No Hit
CGGAAGGATCATTACCACACCAAAGACAATCCACGTGAACCGTCAGAAAT60.1903553299492386No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGTGAGCCGTCAGAAAT60.1903553299492386No Hit
CGGAAGGATCATTACCACGCCAAAAACAATCCACGTGAACCGTCAGAAAT60.1903553299492386No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGTGAACCGTTGTAATT60.1903553299492386No Hit
CGGAAGGATCATTACCACACCAAAACAATCCACGTGAACCGTCAGAAATA60.1903553299492386No Hit
CGGAAGGATCATTACCACGCCAAAAACTATCCACGTGAACCGTTAAGCAA50.15862944162436549No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGTGAACCGCCAGAAAT50.15862944162436549No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT50.15862944162436549No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGTGAACCGTCAGAAGT50.15862944162436549No Hit
CGGAAGGATCATACCACACCAAAAACAATCCACGTGAACCGTCAGAAATA50.15862944162436549No Hit
CGGAAGGATCATTACCACACCAAAAAAACTATCCACGTGAACCGTAAAAA50.15862944162436549No Hit
CGGAAGGATCATTACCACACCAAAAAAACTATCCACGTGAACCGTCAGAA40.12690355329949238No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGTTAAACAA40.12690355329949238No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCGCGTGAACCGTCAGAAAT40.12690355329949238No Hit
CGGAAGGATCATTACCACACAAAAAAAACTATCCACGTGAACCGTCAAAA40.12690355329949238No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGTCAAAAAA40.12690355329949238No Hit
CGGAAGGATCATTACCACGCCAAAAAAAACTTTCCACGTGAACCGTTGTA40.12690355329949238No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCATGTGAACCGTCAGAAAT40.12690355329949238No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGTGAACCGTCAGGAAT40.12690355329949238No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGTGGACCGTCAGAAAT40.12690355329949238No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGTGAACCGTCAGAAAC40.12690355329949238No Hit
CGGAAGGATCATTACCACACCAAAAAAGACTTTCCACGTGAACCGTTGTA40.12690355329949238No Hit
CGGAAGGATCATTACCACACCATAAAACTTTCCACGTGAACCGTTGTAAT40.12690355329949238No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGTGAACCGTTAGAAAT40.12690355329949238No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)