FastQCFastQC Report
Tue 16 Jan 2024
000000000-LC922_l01_n01_ITS-OOChi759.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LC922_l01_n01_ITS-OOChi759.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1890
Sequences flagged as poor quality0
Sequence length301
%GC45

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTACATA80142.38095238095238No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT42822.645502645502646No Hit
CGGAAGGATCATTACCACACAAAAAAACTATCCACGTGAACCGTTACATA392.0634920634920633No Hit
CGGAAGGATCATTAACACACCAAAAAACTATCCACGTGAACCGTTACATA331.746031746031746No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACTGTCAAAC301.5873015873015872No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC291.5343915343915344No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCACTTTGTA251.3227513227513228No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAAACGTTACATA251.3227513227513228No Hit
CGGAAGGATCATTACCACACAAAAAACTATCCACGTGAACCACTTTGTAT231.216931216931217No Hit
CGGAAGGATCATTACCACACCAAAAACTATACACGTGAACCACTTTGTAT191.0052910052910053No Hit
CGGAAGGATCATTACCACACCAAAAAACTAACCACGTGAACCGTTACATA160.8465608465608466No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGTTACATAC120.6349206349206349No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCACGTGAACCGTTAACCAA110.582010582010582No Hit
CGGAAGGATCATTACCACACCAAAAACCATCCACGTGAACCACTTTGTAT100.5291005291005291No Hit
CGGAAGGATCATTAACACACCAAAAACTATCCACGTGAACCACTTTGTAT90.4761904761904762No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACAACTTTGTAT70.3703703703703704No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCAATTTGTAT70.3703703703703704No Hit
CGGAAGGATCATTACCACCAAAAACTATCCACGTGAACCACTTTGTATTG70.3703703703703704No Hit
CGGAAGGATCATTACCACACCAAAAATTATCCACGTGAACCACTTTGTAT70.3703703703703704No Hit
CGGAAGAATCATTACCACACCAAAAAACTATCCACGTGAACCGTTACATA60.31746031746031744No Hit
CGGAAGGATCATTACCACACCAAAAAACTATTCACGTGAACCGTTACATA60.31746031746031744No Hit
CAGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT60.31746031746031744No Hit
CGGAAGGATCATTACCACACCAAAAAACTTTCCACGTGAACCGTTGAAAA50.26455026455026454No Hit
CGGAAGGATCATTACCACCAAAAAACTATCCACGTGAACCGTTACATACC50.26455026455026454No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTACGTA40.21164021164021166No Hit
CGGAAGGATCATTACCACACCAAAAAACCATCCACGTGAACCGTTACATA40.21164021164021166No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAGCCGTTACATA40.21164021164021166No Hit
CGGAAGGATCATTAACACACCAAAAAACTATCCACGTGAACCACTTTGTA40.21164021164021166No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCGCGTGAACCGTTACATA40.21164021164021166No Hit
CGGAAGGATCATTACCACACCAAAAAACTGTCCACGTGAACCGTTACATA40.21164021164021166No Hit
CGGAAGGATCATTACCACACCAAAAAGCTATCCACGTGAACCGTTACATA40.21164021164021166No Hit
CGGAAGGATCATTACCACACCAAAAGACTATCCACGTGAACCGTTACATA40.21164021164021166No Hit
CGGAAGGATCATTACCACACCAAAAAAATATCCACGTGAACCGTTACATA40.21164021164021166No Hit
CGGAAGGATCATTACCACACCTAAAAACTATCCACGTGAACCGTTACATA30.15873015873015872No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTGCATA30.15873015873015872No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTAACCA30.15873015873015872No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGCTTTGTAT30.15873015873015872No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACTGTTACATA30.15873015873015872No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCATGTGAACCGTTACATA30.15873015873015872No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGGACCACTTTGTAT30.15873015873015872No Hit
CGGAAGGATCATTAACACACAAAAAAACTATCCACGTGAACCGTTACATA30.15873015873015872No Hit
CGGAAGGATCATAACCACACCAAAAACTATCCACGTGAACCACTTTGTAT30.15873015873015872No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCATTACATA30.15873015873015872No Hit
CGGAAGGATCATTACCCCACCAAAAAACTATCCACGTGAACCGTTACATA30.15873015873015872No Hit
CGGAAGGATCATTACCACACCGAAAAACTATCCACGTGAACCGTTACATA30.15873015873015872No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGCGAACCGTTACATA30.15873015873015872No Hit
CGGAAGGATCATTACCACACAAAAAACTATACACGTGAACAACTTTGTAT30.15873015873015872No Hit
CGGAAGGATCATTACCACACATAAAAACTTTCCACGTGAACCGTATCAAC30.15873015873015872No Hit
CGGAAGGATCATTACCACACCAAGAAACTATCCACGTGAACCGTTACATA20.10582010582010583No Hit
CGGAAGGATCATTACCACATCAAAAAACTATCCACGTGAACCGTTACATA20.10582010582010583No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCTACGTGAACCGTTACATA20.10582010582010583No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTCACATA20.10582010582010583No Hit
CGGAAAGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT20.10582010582010583No Hit
CGGAAGGATTATTACCACACCAAAAAACTATCCACGTGAACCGTTACATA20.10582010582010583No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACTTTCAAAC20.10582010582010583No Hit
CGGAAGGATCATTACCACACAAAAAACTATACACGTGAACCACTTTGTAT20.10582010582010583No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT20.10582010582010583No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACATGAACCACTTTGTAT20.10582010582010583No Hit
CGGAAGGATCATTACCACGCCAAAAACTATCCACGTGAACCACTTTGTAT20.10582010582010583No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGGACCGTTACATA20.10582010582010583No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTAAACCGTTACATA20.10582010582010583No Hit
CGGAAGGATCATTACCACACCAAAAAAACTATCCACGTGAACCGTTACAT20.10582010582010583No Hit
CAGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC20.10582010582010583No Hit
CGGAAGGATCATTAACACCAAAAAACTATCCACGTGAACCGTTACATACC20.10582010582010583No Hit
CGGAAGGATCATACCACACCAAAAAACTATCCACGTGAACCGTTACATAC20.10582010582010583No Hit
CGGAAGGATCATTAACACACCTAAAAACTTTCCACGTGAACCGTATCAAC20.10582010582010583No Hit
TGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT20.10582010582010583No Hit
CGGAAGGATCATTACCAAACCAAAAACTATCCACGTGAACCACTTTGTAT20.10582010582010583No Hit
CGGAAGGATCATTACCACACAAAAAAAATATCCACGTGAACCGTTACATA20.10582010582010583No Hit
CGGAAGGATATTACCACACCAAAAACTATCCACGTGAACCACTTTGTATT20.10582010582010583No Hit
CAGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTACATA20.10582010582010583No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTATCAAC20.10582010582010583No Hit
CGGAAGGATCATTACCACACCAGAAAACTATCCACGTGAACCGTTACATA20.10582010582010583No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGATACATA20.10582010582010583No Hit
CGGAAGGATCATTACCACCAGCAGTGGATGTCTAGGCTCTGTCTCTTATA20.10582010582010583No Hit
CGGAAGGATCATTACCACACCGAAAACTATCCACGTGAACCACTTTGTAT20.10582010582010583No Hit
CGGAAGGATCATAACCACACCAAAAAACTATCCACGTGAACCGTTACATA20.10582010582010583No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)