FastQCFastQC Report
Tue 16 Jan 2024
000000000-LC922_l01_n01_ITS-OOChi756.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LC922_l01_n01_ITS-OOChi756.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences94
Sequences flagged as poor quality0
Sequence length301
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT4952.12765957446809No Hit
CGGAAGGATCATTACCACTGTCTCTTATACACCAGCAGTGGATGTCTAGG55.319148936170213No Hit
CGGAAGGATCATTACCACCAGCAGTGGATGTCTAGGCTCTGTCTCTTATA55.319148936170213No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTAGGCTCTGTC44.25531914893617No Hit
GATGAGTCAGCGTCGAACATGCAACATTTATTGCATGATACGTGGCATTT33.1914893617021276No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCCTC11.0638297872340425No Hit
CGGAAGGATCATTACCACATCTCCGAGCCCACGTGACAGCAGTGGATGTC11.0638297872340425No Hit
CGGAAGGATCATTACCACCAGCAGTTGATGTCTAGGCTCTGTCTCTTATA11.0638297872340425No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGTCTCTGTCTCT11.0638297872340425No Hit
CGGAAGCATCATTACCACCGTCGGCAGCAGTGGATGTCTAGGCTCTGTCT11.0638297872340425No Hit
CGGAAGGATCATTACCACGTCGTCAGCAGTGGATGTCTAGGCTCTGTCTC11.0638297872340425No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCCCTGTCTCT11.0638297872340425No Hit
CGGAAGGATCATTACCACGAGAAAGCAGTGGATGTCTAGGCTCTGTCTCT11.0638297872340425No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGCAGGTG11.0638297872340425No Hit
CGGAAGGATCATTACCACGAGCAGCAGTGGATGTCTAGGCTCTGTCTCTT11.0638297872340425No Hit
CGGAAGGATCATTACCACGAGCCTCCAGTGGATGTCTAGGCTCTGTCTCT11.0638297872340425No Hit
GATGAGTCAGCGTCGAACATGCAACATTTATAGCATGATACGTGGCATTT11.0638297872340425No Hit
CGGAAGGATCATTCCCACGAGACACAGCAGTGGATGTCTAGGCTCTGTCT11.0638297872340425No Hit
CGGAAGGATCATAACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT11.0638297872340425No Hit
CGGAAGGATCATTACCACATCTCCGAGCCAGCAGTGGATGTCTAGGCTCT11.0638297872340425No Hit
CGGAAGGATCATTACCACGAGACAGCAGCGGATGTCTAGGCCCTGTCTCT11.0638297872340425No Hit
CGTCCTGGCATGTACATTGGCGACACCTCCGACGGCACGGGCCTGCACCA11.0638297872340425No Hit
CGGAAGGATCATTACCACATCTCCGAGCCAGCAGTGGATGTCTAGCTCTG11.0638297872340425No Hit
AGCCCAGCGATGTACATTGGCGACACCGACGACGGGTCGGGCCTGCATCA11.0638297872340425No Hit
CGGAAGGATCATTACCACGAGACACAGCAGTGGATGTCTAGGCTCTGTCT11.0638297872340425No Hit
CGGAAGGATCATTACCACGGGACAGCAGTGGATGTCTAGGCTCTGTCTCT11.0638297872340425No Hit
CGGAAGGATCATTACCACGAGACACCAGCAGTGGATGTCTAGGCTCTGTC11.0638297872340425No Hit
CGGAAGGATCATTAACACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT11.0638297872340425No Hit
CGGAAGGATCATTACCACGAGACATCAGTGGATGTCTAGGCCCTGTCTCT11.0638297872340425No Hit
GATGAGTCAGCGTCGAATAGCCGTTCACTATGTTGCGGTTACTCACTGTC11.0638297872340425No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGATCTGTCTCT11.0638297872340425No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTCA11.0638297872340425No Hit
CGGAAGGATCATTACCACAGACAGCAGTGGATGTCTAGGCTCTGTCTCTT11.0638297872340425No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)