FastQCFastQC Report
Tue 16 Jan 2024
000000000-LC922_l01_n01_ITS-OOChi753.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LC922_l01_n01_ITS-OOChi753.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences68
Sequences flagged as poor quality0
Sequence length301
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT1319.11764705882353No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA913.23529411764706No Hit
GATGAGTCAGCGTCGAACATGCAACATTTATTGCATGATACGTGGCATTT68.823529411764707No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTCA68.823529411764707No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTTCCACGTGAACCGTTGTAA57.352941176470589No Hit
CGGAAGGATCATTACCACGTCGTCGGCAGCAGTGGATGTCTAGGCTCTGT34.411764705882353No Hit
CGGAAGGATCATTACCACTTATTGCTACAGCAGTGGATGTCTAGGCTCTG34.411764705882353No Hit
CGGAAGGATCATTACCACTTATTGCCACAGCAGTGGATGTCTAGGCTCTG22.941176470588235No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC22.941176470588235No Hit
CGGAAGGATCATTACCACACATAAAAAACTTTCCACGTGAACCGTTGTAA11.4705882352941175No Hit
CGAATGATCATTATCACACCTAAAAGCTTTCCACGTGAACCGTATCAAAC11.4705882352941175No Hit
AGGCCAGGGATGTATATCGGCGACACCTCCGACGGCACGGGCCTGCACCA11.4705882352941175No Hit
CGGAAGGATCATTACCACACATAAAAACTTTCCACGTGAACCGTATCAAA11.4705882352941175No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT11.4705882352941175No Hit
CGGAAGGATCATTACCACGCCTAAAAACTTTCCACGTGAACCGTATCAAA11.4705882352941175No Hit
CGGAAGGATCATTACCACGAGACACCGTGGATGTCTAGGTTCTGTCTCTT11.4705882352941175No Hit
CGGAAGGATCATTACCACGTCGTCGGCAGCAATGGATGTCTAGGCTCTGT11.4705882352941175No Hit
CGGAAGGATCATTACCACGCCAAAAAAACTTTCCACGTGAACCGTTGTAA11.4705882352941175No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCGCGTGAACCGTATCAAA11.4705882352941175No Hit
AGGCCAGGAATGTACATCGGCGGCACCGACGAGCGCGCGCTGCACCACCT11.4705882352941175No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATTCAA11.4705882352941175No Hit
CGGAAGGATCATTAACACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT11.4705882352941175No Hit
CGGAAGGATCATTAACACGTAGTCGGCAGCAGTGGATGTCTAGGCTCTGT11.4705882352941175No Hit
GATGAGTCAGCGTCGAATAGCCGTTCACTATGTTGCGGTTACTCACTGTC11.4705882352941175No Hit
CGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCTT11.4705882352941175No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGCGAACCGTTGTAA11.4705882352941175No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTCTCTCT11.4705882352941175No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTAA11.4705882352941175No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)