FastQCFastQC Report
Tue 16 Jan 2024
000000000-LC922_l01_n01_ITS-OOChi740.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LC922_l01_n01_ITS-OOChi740.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences321
Sequences flagged as poor quality0
Sequence length301
%GC41

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTCA23272.27414330218068No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC216.5420560747663545No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATCAA72.1806853582554515No Hit
CGGAAGGATCATTACCACACATAAAAAACTTTCCACGTGAACCGTATTCA41.2461059190031152No Hit
GATGAGTCAGCGTCGAACATGCAACATTTATTGCATGATACGTGGCATTT41.2461059190031152No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATTCAA41.2461059190031152No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT41.2461059190031152No Hit
CGGAAGGATCATTACCAAACCTAAAAAACTTTCCACGTGAACCGTATTCA30.9345794392523363No Hit
CGGAAGGATCATTACCACCTAAAAAACTTTCCACGTGAACCGTATTCAAC30.9345794392523363No Hit
CGGAAGGATCATTACCACACCTAGAAAACTTTCCACGTGAACCGTATTCA20.6230529595015576No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGGACCGTATTCA20.6230529595015576No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTAGGCTCTGTC20.6230529595015576No Hit
CGGAAGGATCATTACCACAGACAGCAGTGGATGTCTAGGCTCTGTCTCTT20.6230529595015576No Hit
CGGAAGGTCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTCAA10.3115264797507788No Hit
AGCCCCGCGATGTATATCGGCGACACCGACGACGGGTCGGGCCTGCATCA10.3115264797507788No Hit
CGGAAGGATCATTACCACAGCAGTGGATGTCTAGGCTCTGTCTCTTATAC10.3115264797507788No Hit
CGGAAGGATCATTACCACACCTAAAAAGCTTTCCACGTGAACCGTATTCA10.3115264797507788No Hit
CGGGAGGATCATTACAACACCTAAAAAACTTTCCACGTGAACCGTATTCA10.3115264797507788No Hit
CGGAAGGATCATTACCACGTCGTCAGCAGTGGATGTCTAGGCTCTGTCTC10.3115264797507788No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATCCA10.3115264797507788No Hit
CGGAAGGATCATTACCACAGCAGTTGATGTCTAGGCTCTGTCTCTTATAC10.3115264797507788No Hit
CGGAAGGATCATTACCACACCTGAAAAACTTTCCACGTGAACCGTATTCA10.3115264797507788No Hit
CGGAAGGATCATTACCACGCCTAAAAAACTTTCCACGTGAACCGTATTCA10.3115264797507788No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCAACGTGAACCGTATTCA10.3115264797507788No Hit
CGGAAGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTA10.3115264797507788No Hit
GAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTAGGCTCTGTCTC10.3115264797507788No Hit
CGGAAGGATCATTACCACACCTAAAAAGCTTTCCACGTGAACCGTATCAA10.3115264797507788No Hit
CGGAAGGATCATTACCACACCCAAAAAACTTTCCACGTGAACCGTATTCA10.3115264797507788No Hit
CGGAAGGATCATTACCACTCGTCGGAAGCAGTGGATGTCTAGGCTCTGTC10.3115264797507788No Hit
CGGAACGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTCA10.3115264797507788No Hit
CGGAAGGAACAGAAAAACACCTAAAAAACTTTCCACGTGAACCGTATTCA10.3115264797507788No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAAACGTATCAAC10.3115264797507788No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAGCCGTATTCA10.3115264797507788No Hit
GATGAGTCATCGTCGAACATGCAACATTTATTTCATGATACGTGGCATTT10.3115264797507788No Hit
CGGAAGGATTATTACCACTCGTCGGCAGCAGTGGATGTCTAGGCTCTGTC10.3115264797507788No Hit
CGGAAGGATCATACCACACCTAAAAAACTTTCCACGTGAACCGTATTCAA10.3115264797507788No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA10.3115264797507788No Hit
CGGCCAGGTATGTACATAGGCGATACCGACGACGGGTCGGGCCTGCATCA10.3115264797507788No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACTGTATTCA10.3115264797507788No Hit
CGGAAGGATCATTACCCCACCTAAAAAACTTTCCACGTGAACCGTATTCA10.3115264797507788No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTTCACGTGAACCGTATTCA10.3115264797507788No Hit
CGGAAGGATCATTAACACACCTAAAAAACTTTCCACGTGAACCGTATTCA10.3115264797507788No Hit
CGGAAGGATCATTACCACACCTAAAAGACTTTCCACGTGAACCGTATTCA10.3115264797507788No Hit
CGGAAGGATCATTACCAGCAGTGGATGTCTAGGCTCTGTCTCTTATACAC10.3115264797507788No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)