FastQCFastQC Report
Tue 16 Jan 2024
000000000-LC922_l01_n01_ITS-OOChi729.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LC922_l01_n01_ITS-OOChi729.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2501
Sequences flagged as poor quality0
Sequence length301
%GC44

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC137955.13794482207117No Hit
CGGAAGGATCATTACCACACCTAAAAATCTTCCACGTGAACCGTATCAAC29011.595361855257897No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT1596.357457017193123No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACTGTCGTTAT512.039184326269492No Hit
CGGAAGGATCATTACCACAGCAGTGGATGTCTAGGCTCTGTCTCTTATAC431.7193122750899639No Hit
CGGAAGGATCATTACCACGAGACCAGCAGTGGATGTCTAGGCTCTGTCTC411.639344262295082No Hit
CGGAAGGATCATTACCACATCTCCGACCCACGAGACAGCAGTGGATGTCT271.0795681727309077No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTAGGCTCTGTC240.9596161535385845No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTTCACGTGAACCGTATCAAA210.8396641343462616No Hit
CGGAAGGATCATTACCACTCAGCAGTGGATGTCTAGGCTCTGTCTCTTAT190.7596961215513794No Hit
CGGAAGGATCATTACCACGCCTAAAAACTTTCCACGTGAACCGTATCAAC110.4398240703718513No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGGACCGTATCAAC100.39984006397441024No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCATGTGAACCGTATCAAC100.39984006397441024No Hit
CGGAAGGATCATTACCACCTAAAAACTTTCCACGTGAACCGTATCAACCC100.39984006397441024No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTCCACGTGAACCGTATCAAC90.3598560575769692No Hit
CGGAAGGATCATTAACACACCTAAAAACTTTCCACGTGAACCGTATCAAC90.3598560575769692No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAAACGTATCAAC90.3598560575769692No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAGCCGTATCAAC80.3198720511795282No Hit
CGGAAGGATCATTACCACACATAAAAACTTTCCACGTGAACCGTATCAAC80.3198720511795282No Hit
CGGAAGGATCATTACCACCAGCAGTGGATGTCTAGGCTCTGTCTCTTATA80.3198720511795282No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTACCAAC80.3198720511795282No Hit
CGGAAGGATCATTACCACACCTAAAGACTTTCCACGTGAACCGTATCAAC70.2798880447820872No Hit
CGGAAGGATCATTACCACACCTAAAACTTTCCACGTGAACCGTATCAACC60.23990403838464613No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCGAC60.23990403838464613No Hit
CGGAAGGATCATTACCACACCTAAAAGCTTTCCACGTGAACCGTATCAAC60.23990403838464613No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGCGAACCGTATCAAC50.19992003198720512No Hit
CGGAAGGATCATTACCACACCTAAAAATCTTCTACGTGAACCGTATCAAC40.1599360255897641No Hit
CGGAAGGATCATTACCACACCTAAAAACTCTCCACGTGAACCGTATCAAC40.1599360255897641No Hit
CGGAAGGATCATTAACACAGCAGTGGATGTCTAGGCTCTGTCTCTTATAC40.1599360255897641No Hit
GATGAGTCAGCGTCGAACATGCAACATTTATTGCATGATACGTGGCATTT40.1599360255897641No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCGCGTGAACCGTATCAAC40.1599360255897641No Hit
CGGAAGGATCATTACCACACCTAAAAACTTCCCACGTGAACCGTATCAAC40.1599360255897641No Hit
CGGAAGGATCATTACCACAACTAAAAACTTTCCACGTGAACCGTATCAAC40.1599360255897641No Hit
CGGAAGGATCATTACCACACCAAAAACTATACACGTGAACCACTTTGTAT30.11995201919232307No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCACGTGAACCACTTTGTAT30.11995201919232307No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTCA30.11995201919232307No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTTCACGTGAACCGTATCAAC30.11995201919232307No Hit
CGGAAGGATCATTACCAAACCTAAAAACTTTCCACGTGAACCGTATCAAC30.11995201919232307No Hit
CGGAAGGATCATTACCACACCTAGAAACTTTCCACGTGAACCGTATCAAC30.11995201919232307No Hit
CGGAAGGATCATTACCACACCTAAAAATTTTCCACGTGAACCGTATCAAC30.11995201919232307No Hit
CGGAAGGATCATTACCCCACCTAAAAACTTTCCACGTGAACCGTATCAAC30.11995201919232307No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGCATCAAC30.11995201919232307No Hit
TGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC30.11995201919232307No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGTACCGTATCAAC30.11995201919232307No Hit
CGGAAGGATCATTACCACACCTAAGAACTTTCCACGTGAACCGTATCAAC30.11995201919232307No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTAAACCGTATCAAC30.11995201919232307No Hit
CGGAAGGATCATTCCACACCTAAAAACTTTCCACGTGAACCGTATCAACC30.11995201919232307No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA30.11995201919232307No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTGTCAAC30.11995201919232307No Hit
CGGAAGGATCATTACCACACCTAAAAATCTTCCACGTGGACCGTATCAAC30.11995201919232307No Hit
CGGAAGGATCTTACCACACCTAAAAACTTTCCACGTGAACCGTATCAACC30.11995201919232307No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)