FastQCFastQC Report
Tue 16 Jan 2024
000000000-LC922_l01_n01_ITS-OOChi726.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LC922_l01_n01_ITS-OOChi726.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8781
Sequences flagged as poor quality0
Sequence length301
%GC44

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT514358.56963899328095No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC7798.871426944539346No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA3534.0200432752533874No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTAATTC2763.143149982917663No Hit
CGGAAGGATCATTACCACACCAAAAAACTTTCCACGTGAACCGTAATAAT971.1046577838514977No Hit
CGGAAGGATCATTACCACCAAAAACTATCCACGTGAACCACTTTGTATTG760.8655050677599363No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATTAAA680.7743992711536272No Hit
CGGAAGGATCATTACCACACAAAAAACTATCCACGTGAACCACTTTGTAT670.7630110465778386No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAATCTGTACTG640.7288463728504726No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACAACTTTGTAT640.7288463728504726No Hit
CGGAAGGATCATTAACACACCAAAAACTATCCACGTGAACCACTTTGTAT630.717458148274684No Hit
CGGAAGGATCATTACCACACCAAAAACTATACACGTGAACCACTTTGTAT530.6035759025167976No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTCGTAT470.5352465550620659No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTTCCACGTGAACCGTTGTAA420.47830543218312266No Hit
CGGAAGGATCATTACCACACCAAAAACTATTCACGTGAACCACTTTGTAT400.45552898303154543No Hit
CGGAAGGATCATTACCACATCTCCACCCACACCAGCAGTGGATGTCTAGG340.3871996355768136No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCACTTTGTA320.3644231864252363No Hit
CGGAAGGATCATTACCACACCAAAAACTATCTACGTGAACCACTTTGTAT320.3644231864252363No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGCGAACCACTTTGTAT310.3530349618494477No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAGCCACTTTGTAT290.3302585126978704No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGGACCACTTTGTAT280.31887028812208174No Hit
CGGAAGGATCATTACCACGCCAAAAACTATCCACGTGAACCACTTTGTAT250.28470561439471587No Hit
CGGAAGGATCATTACCACACCAAAAGCTATCCACGTGAACCACTTTGTAT230.2619291652431386No Hit
CGGAAGGATCATTACCACACCAGAAACTATCCACGTGAACCACTTTGTAT220.25054094066734994No Hit
CGGAAGGATCATTACCACACCAAAGACTATCCACGTGAACCACTTTGTAT200.22776449151577272No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCGCGTGAACCACTTTGTAT200.22776449151577272No Hit
CGGAAGGATCATTACCACACCAAAAACTACCCACGTGAACCACTTTGTAT190.21637626693998407No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGCTTTGTAT190.21637626693998407No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACCTTGTAT180.20498804236419543No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTAATCC170.1935998177884068No Hit
CGGAAGGATCATTACCACACCTAAAAACTATCCACGTGAACCACTTTGTA170.1935998177884068No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACTGTCAAAC170.1935998177884068No Hit
CGGAAGGATCATTACCACACCGAAAACTATCCACGTGAACCACTTTGTAT170.1935998177884068No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTCTGTAT160.18221159321261815No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGTATCAACC150.17082336863682954No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTGT150.17082336863682954No Hit
CGGAAGGATCATTACCACACCAAGAACTATCCACGTGAACCACTTTGTAT140.15943514406104087No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCACTTTGTA140.15943514406104087No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGTTAATTCA130.14804691948525225No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAC120.1366586949094636No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCACGTGAACCACTTTGTAT110.12527047033367497No Hit
CGGAAGGATCATACCACACCAAAAACTATCCACGTGAACCACTTTGTATT110.12527047033367497No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCAATTTGTAT110.12527047033367497No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGTATCAAAC100.11388224575788636No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACATGAACCACTTTGTAT100.11388224575788636No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGCAT90.10249402118209772No Hit
CGGAAGGATCATTACCACACCAAAAACCATCCACGTGAACCACTTTGTAT90.10249402118209772No Hit
CGGAAGGATCATTATCACACCAAAAACTATCCACGTGAACCACTTTGTAT90.10249402118209772No Hit
CGGAAGGATCATTACCCCACCAAAAACTATCCACGTGAACCACTTTGTAT90.10249402118209772No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)