FastQCFastQC Report
Tue 16 Jan 2024
000000000-LC922_l01_n01_ITS-OOChi723.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LC922_l01_n01_ITS-OOChi723.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3299
Sequences flagged as poor quality0
Sequence length301
%GC47

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC160048.49954531676266No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGTGAACCGTCAGAAAT81624.734768111548956No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAAAATGTTCTG852.5765383449530157No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT692.0915428917853895No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAATCTGTACTG551.6671718702637162No Hit
CGGAAGGATCATTACCACTCGTCAGCAGTGGATGTCTAGGCTCTGTCTCT381.151864201273113No Hit
CGGAAGGATCATTACCACAGCAGTGGATGTCTAGGCTCTGTCTCTTATAC331.00030312215823No Hit
CGGAAGGATCATTACCACACCAAAAAAACTATCCACGTGAACCGTTAAAC250.7578053955744165No Hit
CGGAAGGATCATTACCACCAAAAACAATCCACGTGAACCGTCAGAAATAG170.5153076689906032No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGCGAACCGTATCAAC140.4243710215216732No Hit
CGGAAGGATCATTACCACCTAAAAACTTTCCACGTGAACCGTATCAACCC130.39405880569869656No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAAACGTATCAAC130.39405880569869656No Hit
CGGAAGGATCATTAACACACCTAAAAACTTTCCACGTGAACCGTATCAAC120.3637465898757199No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTCAGAAA110.33343437405274323No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGGACCGTATCAAC100.3031221582297666No Hit
CGGAAGGATCATTACCACACATAAAAACTTTCCACGTGAACCGTATCAAC100.3031221582297666No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAGCCGTATCAAC90.2728099424067899No Hit
CGGAAGGATCATTACCACACCTAAAAACTTCCCACGTGAACCGTATCAAC90.2728099424067899No Hit
CGGAAGGATCATTACCACTGCCAAATATAAATAGTCCAAGAACAATGCAA90.2728099424067899No Hit
CGGAAGGATCATTACCACACCTAGAAACTTTCCACGTGAACCGTATCAAC80.24249772658381327No Hit
CGGAAGGATCATTACCACACCAAAAACAATACACGTGAACCGTCAGAAAT80.24249772658381327No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGTGAACAGTCAGAAAT80.24249772658381327No Hit
CGGAAGGATCATTACCACACCTAAAACTTTCCACGTGAACCGTATCAACC70.2121855107608366No Hit
CGGAAGGATCATTACCACACAAAAAACAATCCACGTGAACCGTCAGAAAT70.2121855107608366No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGTGAACCGTCATAAAT70.2121855107608366No Hit
CGGAAGGATCATTACCACACCTAAAGACTTTCCACGTGAACCGTATCAAC60.18187329493785995No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAGC60.18187329493785995No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGTGAACCGTCGGAAAT60.18187329493785995No Hit
CGGAAGGATCATTACCACACCAAAAGCAATCCACGTGAACCGTCAGAAAT60.18187329493785995No Hit
CGGAAGGATCATTACCACGCCTAAAAACTTTCCACGTGAACCGTATCAAC60.18187329493785995No Hit
CGGAAGGATCATTACCACACCTAAGAACTTTCCACGTGAACCGTATCAAC60.18187329493785995No Hit
CGGAAGGATCATTACCACACCTAAAAGCTTTCCACGTGAACCGTATCAAC60.18187329493785995No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGTGAACCGCCAGAAAT50.1515610791148833No Hit
CGGAAGGATCATTACCACACCTAAAAACTCTCCACGTGAACCGTATCAAC50.1515610791148833No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTCCACGTGAACCGTATCAAC50.1515610791148833No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCGAC50.1515610791148833No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTACCAAC50.1515610791148833No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGCGAACCGTCAGAAAT40.12124886329190664No Hit
CGGAAGGATCATTACTACACCTAAAAACTTTCCACGTGAACCGTATCAAC40.12124886329190664No Hit
CGGAAGGATCATTACCACACCTAAAAAATTTCCACGTGAACCGTATCAAC40.12124886329190664No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAATCGTATCAAC40.12124886329190664No Hit
CGGAAGGATCATTAACACACCAAAAACAATCCACGTGAACCGTCAGAAAT40.12124886329190664No Hit
CGGAAGGATCATTACCACACCTGAAAACTTTCCACGTGAACCGTATCAAC40.12124886329190664No Hit
CGGAAGGATCATTACCACACCAAAACAATCCACGTGAACCGTCAGAAATA40.12124886329190664No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCATATCAAC40.12124886329190664No Hit
CGGAAGGATCATTACCACACCAAAAACGATCCACGTGAACCGTCAGAAAT40.12124886329190664No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)