FastQCFastQC Report
Tue 16 Jan 2024
000000000-LC922_l01_n01_ITS-OOChi722.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LC922_l01_n01_ITS-OOChi722.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4233
Sequences flagged as poor quality0
Sequence length301
%GC40

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTCA363785.92015119300733No Hit
CGGAAGGATCATTACCACACATAAAAAACTTTCCACGTGAACCGTATTCA370.8740845735884715No Hit
CGGAAGGATCATTAACACACCTAAAAAACTTTCCACGTGAACCGTATTCA290.6850933144342074No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAGCCGTATTCA250.5905976848570754No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATTCAA230.5433498700685093No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGGACCGTATTCA200.4724781478856603No Hit
CGGAAGGATCATTACCACCTAAAAAACTTTCCACGTGAACCGTATTCAAC200.4724781478856603No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTACTCA160.37798251830852825No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCCACGTGAACCGTATTCA160.37798251830852825No Hit
CGGAAGGATCATTACCACACCTAAAAAACCTTCCACGTGAACCGTATTCA150.3543586109142452No Hit
CGGAAGGATCATTACCACACCTAAAAAACTCTCCACGTGAACCGTATTCA150.3543586109142452No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTCG140.3307347035199622No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGCGAACCGTATTCA130.3071107961256792No Hit
CGGAAGGATCATTACCACGCCTAAAAAACTTTCCACGTGAACCGTATTCA110.25986298133711316No Hit
CGGAAGGATCATTACCACACCCAAAAAACTTTCCACGTGAACCGTATTCA110.25986298133711316No Hit
CGGAAGGATCATTACCACACCTAAAGAACTTTCCACGTGAACCGTATTCA100.23623907394283014No Hit
CGGAAGGATCATTACCACACCTAGAAAACTTTCCACGTGAACCGTATTCA100.23623907394283014No Hit
CGGAAGGATCATTACCACACCTAAAAGACTTTCCACGTGAACCGTATTCA90.21261516654854712No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCATGTGAACCGTATTCA90.21261516654854712No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCGCGTGAACCGTATTCA90.21261516654854712No Hit
CGGAAGGATCATTACCACACCTAAAAAGCTTTCCACGTGAACCGTATTCA80.18899125915426412No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATCCA70.1653673517599811No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTTA70.1653673517599811No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACTGTATTCA70.1653673517599811No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACATGAACCGTATTCA60.14174344436569808No Hit
CAGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTCA60.14174344436569808No Hit
CGGAAGGATCATACCACACCTAAAAAACTTTCCACGTGAACCGTATTCAA60.14174344436569808No Hit
CGGAAGGATCATTACCCCACCTAAAAAACTTTCCACGTGAACCGTATTCA50.11811953697141507No Hit
CGGAAGGATCATTATCACACCTAAAAAACTTTCCACGTGAACCGTATTCA50.11811953697141507No Hit
CGGAAGGATCATTACCACACCTGAAAAACTTTCCACGTGAACCGTATTCA50.11811953697141507No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)