FastQCFastQC Report
Tue 16 Jan 2024
000000000-LC922_l01_n01_ITS-OOChi711.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LC922_l01_n01_ITS-OOChi711.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8598
Sequences flagged as poor quality0
Sequence length301
%GC45

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT655976.2851826006048No Hit
CGGAAGGATCATTACCACACAAAAAACTATCCACGTGAACCACTTTGTAT1782.070248895091882No Hit
CGGAAGGATCATTAACACACCAAAAACTATCCACGTGAACCACTTTGTAT1601.8608978832286578No Hit
CGGAAGGATCATTACCACACCAAAAACTATACACGTGAACCACTTTGTAT1451.686438706675971No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACAACTTTGTAT1231.4305652477320308No Hit
CGGAAGGATCATTACCACCAAAAACTATCCACGTGAACCACTTTGTATTG420.48848569434752265No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCAATTTGTAT340.3954408001860898No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA320.37217957664573154No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACCTTGTAT300.34891835310537334No Hit
CGGAAGGATCATTACCACGCCAAAAACTATCCACGTGAACCACTTTGTAT270.31402651779483604No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGGACCACTTTGTAT260.30239590602465694No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAATCTGTACTT260.30239590602465694No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTCGTAT250.2907652942544778No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGCGAACCACTTTGTAT240.2791346824842987No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTCTGTAT240.2791346824842987No Hit
CGGAAGGATCATTACCACACCAAAGACTATCCACGTGAACCACTTTGTAT230.2675040707141195No Hit
CGGAAGGATCATTACCACACCAAAAAAACTATCCACGTGAACCGTCAAAA230.2675040707141195No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAGCCACTTTGTAT230.2675040707141195No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAC210.24424284717376132No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCGCGTGAACCACTTTGTAT210.24424284717376132No Hit
CGGAAGAATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT210.24424284717376132No Hit
CGGAAGGATCATTACCACACCAAAAGCTATCCACGTGAACCACTTTGTAT210.24424284717376132No Hit
CGGAAGGATCATTACCACACCGAAAACTATCCACGTGAACCACTTTGTAT200.23261223540358222No Hit
CGGAAGGATCATTACCAAACCAAAAACTATCCACGTGAACCACTTTGTAT190.22098162363340312No Hit
CGGAAGGATCATTACCACACCAAGAACTATCCACGTGAACCACTTTGTAT170.1977204000930449No Hit
CGGAAGGATCATTACCACACCAAAAACCATCCACGTGAACCACTTTGTAT170.1977204000930449No Hit
CGGAAGGATCATTACCACACCAAAAAGTATCCACGTGAACCACTTTGTAT160.18608978832286577No Hit
CGGAAGGATCATTACCACACCAAAAACTACCCACGTGAACCACTTTGTAT150.17445917655268667No Hit
CGGAAGGATCATACCACACCAAAAACTATCCACGTGAACCACTTTGTATT150.17445917655268667No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGCTTTGTAT140.16282856478250757No Hit
CGGAAGGATCATTACCACACAAAAAACTATACACGTGAACCACTTTGTAT140.16282856478250757No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGCAT140.16282856478250757No Hit
CAGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT140.16282856478250757No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCATGTGAACCACTTTGTAT130.15119795301232847No Hit
CGGAAGGATCATTACCACACCAGAAACTATCCACGTGAACCACTTTGTAT120.13956734124214934No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTGT120.13956734124214934No Hit
CGGAAGGATCATTACCACACCAAAAACTGTCCACGTGAACCACTTTGTAT120.13956734124214934No Hit
CGGAAGGATTATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT110.1279367294719702No Hit
CGGAAGGATCATTACCACACCAAAACTATCCACGTGAACCACTTTGTATT110.1279367294719702No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACTACTTTGTAT100.11630611770179111No Hit
CGGAAGGATCATTAACACACAAAAAACTATCCACGTGAACCACTTTGTAT100.11630611770179111No Hit
CGGAAGGATCATTACCACATCAAAAACTATCCACGTGAACCACTTTGTAT90.10467550593161201No Hit
TGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT90.10467550593161201No Hit
CGGAAGGATCATTACCACACCAAAAACTATTCACGTGAACCACTTTGTAT90.10467550593161201No Hit
CGGAAGGATCATTAACACACCAAAAACTATCCACGTGAACAACTTTGTAT90.10467550593161201No Hit
CGGAAGGAACATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT90.10467550593161201No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)