FastQCFastQC Report
Tue 16 Jan 2024
000000000-LC922_l01_n01_ITS-OOChi710.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LC922_l01_n01_ITS-OOChi710.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2153
Sequences flagged as poor quality0
Sequence length301
%GC46

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCTAAAACTATCCACGTGAACCGTTAACCAA117254.43567115652578No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC47422.015791918253598No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTCA472.1830004644681837No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCACGTGAACCGCTAACCAA210.9753831862517418No Hit
CGGAAGGATCATTAACACACCTAAAACTATCCACGTGAACCGTTAACCAA200.9289363678588017No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCGTCAGCAGTGGATGTCTAGGC190.8824895494658616No Hit
CGGAAGGATCATTACCACGACAGCAGTGGATGTCTAGGCTCTGTCTCTTA170.7895959126799814No Hit
CGGAAGGATCATTACCACACCTAAAACTATACACGTGAACCGTTAACCAA150.6967022758941013No Hit
CGGAAGGATCATTACCACCTAAAACTATCCACGTGAACCGTTAACCAAAC140.6502554575011612No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCACGTGGACCGTTAACCAA130.603808639108221No Hit
CGGAAGGATCATTACCACACATAAAACTATCCACGTGAACCGTTAACCAA130.603808639108221No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCACGTGAGCCGTTAACCAA120.5573618207152811No Hit
CGGAAGGATCATTACCACCGTCAGCAGTGGATGTCTAGGCTCTGTCTCTT110.5109150023223409No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAAACGTATCAAC110.5109150023223409No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCACGTGAACCGTTAACCGA80.3715745471435207No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCACGTGAACCGTATCAACA80.3715745471435207No Hit
CGGAAGGATCATTACCACGCCTAAAACTATCCACGTGAACCGTTAACCAA60.27868091035764053No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCGCGTGAACCGTTAACCAA60.27868091035764053No Hit
CGGAAGGATCATTAACACACCTAAAAACTTTCCACGTGAACCGTATCAAC60.27868091035764053No Hit
CGGAAGGATCATTACCACACCCAAAAACTTTCCACGTGAACCGTATCAAC60.27868091035764053No Hit
CGGAAGGATCATTACCACACATAAAAACTTTCCACGTGAACCGTATCAAC60.27868091035764053No Hit
CGGAAGGATCATTACCACCTAAAAACTTTCCACGTGAACCGTATCAACAA50.23223409196470043No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCACGTGAACAGTTAACCAA50.23223409196470043No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCACGTGAACCGTTGACCAA40.18578727357176034No Hit
CGGAAGGATCATTACCACACCTAAAACTACCCACGTGAACCGTTAACCAA40.18578727357176034No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGGACCGTATCAAC40.18578727357176034No Hit
CGGAAGGATCATTACCACACCTAAAACCATCCACGTGAACCGTTAACCAA40.18578727357176034No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCACGTGAACCGTCAACCAA40.18578727357176034No Hit
CGGAAGGATCATTACCACACCTAAGACTATCCACGTGAACCGTTAACCAA40.18578727357176034No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCACGTGAACCGTTAGCCAA40.18578727357176034No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTTAACCA30.13934045517882027No Hit
CGGAAGGATCATTACCACACCTAAAGACTTTCCACGTGAACCGTATCAAC30.13934045517882027No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCATGTGAACCGTTAACCAA30.13934045517882027No Hit
CGGAAGGATCATTACCACACCTAAAACTGTCCACGTGAACCGTTAACCAA30.13934045517882027No Hit
CGGAAGGTCATTACCACACCTAAAACTATCCACGTGAACCGTTAACCAAA30.13934045517882027No Hit
CGGAAGATCATTACCACACCTAAAACTATCCACGTGAACCGTTAACCAAA30.13934045517882027No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCACGCGAACCGTTAACCAA30.13934045517882027No Hit
CGGAAGGATCATTACCACCGGCAGCAGTGGATGTCTAGGCTCTGTCTCTT30.13934045517882027No Hit
GATGAGTCAGCGTCGAACATGCAACATTTATTGCATGATACGTGGCATTT30.13934045517882027No Hit
CGGAAGGATCATTACCACACCTAAAAACTTCCCACGTGAACCGTATCAAC30.13934045517882027No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)