FastQCFastQC Report
Tue 16 Jan 2024
000000000-LC922_l01_n01_ITS-OOChi709.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LC922_l01_n01_ITS-OOChi709.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3048
Sequences flagged as poor quality0
Sequence length301
%GC42

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA92430.314960629921263No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC64421.128608923884514No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAATCTGTACTG63220.73490813648294No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACTGTCATTA1013.3136482939632548No Hit
CGGAAGGATCATTACCACACCAAAAAAACTATCCACGTGAACCGTCAAAA832.7230971128608927No Hit
CGGAAGGATCATTACCACATCAGCAGTGGATGTCTAGGCTCTGTCTCTTA371.2139107611548556No Hit
CGGAAGGATCATTACCACATCTCCGAGCCCACGAGACGTAACGAGATCTC371.2139107611548556No Hit
CGGAAGGATCATTACCACACCTAAAAAACTATCCACGTGAACCGTTAAGC230.7545931758530183No Hit
CGGAAGGATCATTACCACATCTCCGAGCCCCGAGACAGCAGTGGATGTCT170.5577427821522309No Hit
CGGAAGGATCATTACCACTCGGCAGCAGTGGATGTCTAGGCTCTGTCTCT150.4921259842519685No Hit
CGGAAGGATCATTACCACACCAAAAAACTTACCACGTGAATCTGTACTGT140.45931758530183725No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAGCCGTATCAAA100.32808398950131235No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATCAA90.2952755905511811No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGCGAACCGTATCAAC70.22965879265091863No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGGATCTGTACTG70.22965879265091863No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACTGTCATTAT60.19685039370078738No Hit
CGGAAGGATCATTACCACCAAAAAAACTTACCACGTGAATCTGTACTGTT60.19685039370078738No Hit
CGGAAGGATCATTAACACACCTAAAAACTTTCCACGTGAACCGTATCAAC60.19685039370078738No Hit
CGGAAGGATCATTACCACACCTAAAGACTTTCCACGTGAACCGTATCAAA50.16404199475065617No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAGCCGTATCAAC50.16404199475065617No Hit
CGGAAGGATCATTACCACACCAAAAAGACTTACCACGTGAATCTGTACTG50.16404199475065617No Hit
CGGAAGGATCATTACCACGCCTAAAAACTTTCCACGTGAACCGTATCAAA50.16404199475065617No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGGACCGTATCAAA50.16404199475065617No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGACTCTGTACTG50.16404199475065617No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCGCGTGAACCGTATCAAC50.16404199475065617No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCAAGTGAACCGTATCAAC50.16404199475065617No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAAACGTATCAAC50.16404199475065617No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGCGAATCTGTACTG40.13123359580052493No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTACCACGTGAATCTGTACTG40.13123359580052493No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAATCCGTACTG40.13123359580052493No Hit
CGGAAGGATCATTACCACCTAAAAACTTTCCACGTGAACCGTATCAAACC40.13123359580052493No Hit
CGGAAGGATCATTACCACACAAAAAAAACTTACCACGTGAATCTGTACTG40.13123359580052493No Hit
CGGAAGGATCATTAACACATCAGCAGTGGATGTCTAGGCTCTGTCTCTTA40.13123359580052493No Hit
CGGAAGGATCATTACCACACCTAGAAACTTTCCACGTGAACCGTATCAAA40.13123359580052493No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTCCACGTGAACCGTATCAAC40.13123359580052493No Hit
CGGAAGGATCATTACCACACCTAAAAAATTTCCACGTGAACCGTATCAAC40.13123359580052493No Hit
CGGAAGGATCATTAACACACCTAAAAACTTTCCACGTGAACCGTATCAAA40.13123359580052493No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAG40.13123359580052493No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAACCGTATCAA40.13123359580052493No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAAACGTATCAAA40.13123359580052493No Hit
CGGAAGGATCATTACCACACCTAAAAGCTTTCCACGTGAACCGTATCAAC40.13123359580052493No Hit
CGGAAGGATCATTACCACACATAAAAACTTTCCACGTGAACCGTATCAAC40.13123359580052493No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTACCAAC40.13123359580052493No Hit
CGGAAGGATCATTACCACACCAAAAAACTTTCCACGTGAACCGTATCAAC40.13123359580052493No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)