FastQCFastQC Report
Tue 16 Jan 2024
000000000-LC922_l01_n01_ITS-OOChi696.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LC922_l01_n01_ITS-OOChi696.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4845
Sequences flagged as poor quality0
Sequence length301
%GC43

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT334969.12280701754386No Hit
CGGAAGGATCATTACCACACAAAAAACTATCCACGTGAACCACTTTGTAT1563.219814241486068No Hit
CGGAAGGATCATTAACACACCAAAAACTATCCACGTGAACCACTTTGTAT1442.9721362229102164No Hit
CGGAAGGATCATTACCACACCAAAAACTATACACGTGAACCACTTTGTAT1332.7450980392156863No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACAACTTTGTAT871.7956656346749225No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC861.7750257997936016No Hit
CGGAAGGATCATTACCACCAAAAACTATCCACGTGAACCACTTTGTATAG290.5985552115583075No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGGACCACTTTGTAT240.49535603715170284No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAGCCACTTTGTAT240.49535603715170284No Hit
CGGAAGAATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT220.4540763673890609No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTCTGTAT190.39215686274509803No Hit
CGGAAGGATCATTACCACACCAAGAACTATCCACGTGAACCACTTTGTAT190.39215686274509803No Hit
CGGAAGGATCATTACCACACAAAAAACTATACACGTGAACCACTTTGTAT180.37151702786377705No Hit
CGGAAGGATCATTACCACACCTAAAAAACTATCCACGTGAACCGTTAAGC170.3508771929824561No Hit
CGGAAGGATCATTAACACACAAAAAACTATCCACGTGAACCACTTTGTAT170.3508771929824561No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCAATTTGTAT160.3302373581011352No Hit
CGGAAGGATCATTACCACGCCAAAAACTATCCACGTGAACCACTTTGTAT150.30959752321981426No Hit
CGGAAGGATCATTACCACACAAAAAACTATCCACGTGAACAACTTTGTAT140.2889576883384933No Hit
CGGAAGGATCATTACCACACCAAAAACCATCCACGTGAACCACTTTGTAT130.26831785345717235No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGCTTTGTAT120.24767801857585142No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGCGAACCACTTTGTAT120.24767801857585142No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCGCGTGAACCACTTTGTAT120.24767801857585142No Hit
CGGAAGGATCATTACCACACCAAAAACTACCCACGTGAACCACTTTGTAT110.22703818369453044No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACCTTGTAT110.22703818369453044No Hit
CGGAAGGATCATTACCACACCAAAAGCTATCCACGTGAACCACTTTGTAT110.22703818369453044No Hit
TGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT100.20639834881320948No Hit
CAGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT100.20639834881320948No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTAAACCACTTTGTAT90.18575851393188852No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTCGTAT90.18575851393188852No Hit
CGGAAGGATCATTACCACACCGAAAACTATCCACGTGAACCACTTTGTAT90.18575851393188852No Hit
CGGAAGGATCATTACCACACCAAAGACTATCCACGTGAACCACTTTGTAT80.1651186790505676No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTGT80.1651186790505676No Hit
CGGAAGGATCATACCACACCAAAAACTATCCACGTGAACCACTTTGTATA70.14447884416924664No Hit
CGGAAGGATCATTACCACACCAAAAACTATACACGTGAACAACTTTGTAT70.14447884416924664No Hit
CGGAAGGATCATTACCACACCAAAACTATCCACGTGAACCACTTTGTATA70.14447884416924664No Hit
CGGAAGGATCATAACCACACCAAAAACTATCCACGTGAACCACTTTGTAT70.14447884416924664No Hit
CGGAAGGATCATTACCACACCAGAAACTATCCACGTGAACCACTTTGTAT70.14447884416924664No Hit
CGGAAGGAACATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT70.14447884416924664No Hit
CGGAAGGATCATTACCCCACCAAAAACTATCCACGTGAACCACTTTGTAT70.14447884416924664No Hit
CGGAAGGATCATTAACACACCAAAAACTATACACGTGAACCACTTTGTAT70.14447884416924664No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACTGTCGTTAT70.14447884416924664No Hit
CGGAAGGATCATTACCACACCAAAAACTATTCACGTGAACCACTTTGTAT60.12383900928792571No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACAAATTTGTAT60.12383900928792571No Hit
CGGAAGGATCATTAACACACAAAAAACTATACACGTGAACCACTTTGTAT50.10319917440660474No Hit
CGGAAGGATCTTACCACACCAAAAACTATCCACGTGAACCACTTTGTATA50.10319917440660474No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAC50.10319917440660474No Hit
CGGAAGGTCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTATA50.10319917440660474No Hit
CGGAAGGATCATTACCACACCAAAAACTATCTACGTGAACCACTTTGTAT50.10319917440660474No Hit
CGGAAGGATCATTACCAAACCAAAAACTATCCACGTGAACCACTTTGTAT50.10319917440660474No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGTACCACTTTGTAT50.10319917440660474No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)