FastQCFastQC Report
Tue 16 Jan 2024
000000000-LC922_l01_n01_ITS-OOChi691.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LC922_l01_n01_ITS-OOChi691.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1539
Sequences flagged as poor quality0
Sequence length301
%GC42

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACTGTATCAAA63841.45549057829759No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC1479.551656920077972No Hit
CGGAAGGATCATTACCACACCAAAAACAACCCACGTGAAAATGTACTGTC1429.226770630279402No Hit
CGGAAGGATCATTACCACGAGACCAGCAGTGGATGTCTAGGCTCTGTCTC553.5737491877842755No Hit
CGGAAGGATCATTACCACATCTCCAGCAGTGGATGTCTAGGCTCTGTCTC523.378817413905133No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTCA503.248862897985705No Hit
CGGAAGGATCATTACCACACCTAAAAACTTCCCCCGTGAACCGTATCAAC362.3391812865497075No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT342.2092267706302793No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTAGGCTCTGTC312.014294996751137No Hit
CGGAAGGATCATTACCACTCAGCAGTGGATGTCTAGGCTCTGTCTCTTAT271.7543859649122806No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTAAACA191.2345679012345678No Hit
CGGAAGGATCATTACCACTGTCTCTTATACACAGCAGTGGATGTCTAGGC171.1046133853151396No Hit
CGGAAGGATCATTACCACATCTCCGAGCCCACGAGACTCTCTATGATCTC140.9096816114359974No Hit
CAGTGGATGTCTAGGCTCTGTCTCTTATACACATCTCCGAGCCCACGAGA90.5847953216374269No Hit
CGGAAGGATCATTACCACACATAAAAAACTTCCACGTGAACTGTATCAAA70.4548408057179987No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCGTCAGATGTGTATAAGAGACA60.3898635477582846No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAGCTGTATCAAA60.3898635477582846No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGGACTGTATCAAA50.3248862897985705No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACTGTATCAAG50.3248862897985705No Hit
CGGAAGGATCATTACCACACCTAAAGAACTTCCACGTGAACTGTATCAAA50.3248862897985705No Hit
CGGAAGGATCATTACCACCTAAAAAACTTCCACGTGAACTGTATCAAAAC50.3248862897985705No Hit
CGGAAGGATCATTACCACATCTCCGAGCCCACGAGACCCAGCAGTGGATG50.3248862897985705No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCGCGTGAACTGTATCAAA40.2599090318388564No Hit
CGGAAGGATCATTACCACACCTAAAAGACTTCCACGTGAACTGTATCAAA40.2599090318388564No Hit
CGGAAGGATCATTACCACGCCTAAAAAACTTCCACGTGAACTGTATCAAA30.1949317738791423No Hit
CGGAAGGATCATTACCACACCTAAAAAGCTTCCACGTGAACTGTATCAAA30.1949317738791423No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTCCACGTGAACCGTATCAAC30.1949317738791423No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACTGTACCAAA30.1949317738791423No Hit
CGGAAGGATCATTACCACGATACCAGCAGTGGATGTCTAGGCTCTGTCTC30.1949317738791423No Hit
CGGAAGGATCATTACCACGAGACCAGCAGTGTATGTCTAGGCTCTGTCTC30.1949317738791423No Hit
CGGAAGGATCATTACCAAACCTAAAAAACTTCCACGTGAACTGTATCAAA30.1949317738791423No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAAACGTATCAAC30.1949317738791423No Hit
CGGAAGGATCATTACCACACCTAAAAACTTCCACGTGAACTGTATCAAAA30.1949317738791423No Hit
CGGAAGGATCATTACCACACATAAAAACTTTCCACGTGAACCGTATCAAC30.1949317738791423No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAATTGTATCAAA20.1299545159194282No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACTGTATCAAC20.1299545159194282No Hit
CGGAAGGATCATTACCACATCTCCAGCAGTGTATGTCTAGGCTCTGTCTC20.1299545159194282No Hit
CGGAAGGATCATTACCACCAAAAACAACCCACGTGAAAATGTACTGTCTG20.1299545159194282No Hit
CGGAAGGATCATTAACACACCTAAAAAACTTCCACGTGAACTGTATCAAA20.1299545159194282No Hit
CGGAAGGATCATTAACACATCTCCAGCAGTGGATGTCTAGGCTCTGTCTC20.1299545159194282No Hit
CGGAAGGATCATTACCACACCAAAAACAACCCACGTGAAAGTGTACTGTC20.1299545159194282No Hit
CGGAAGGATCATTACCACGAGACCATCAGTGGATGTCTAGGCTCTGTCTC20.1299545159194282No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAAACGTTAAACA20.1299545159194282No Hit
CGGAAGGATCATTAACACACCTAAAAACTTTCCACGTGAACCGTATCAAC20.1299545159194282No Hit
CGGAAGGATCATTAACACACCTAAAAACCTCCACGTGAACTGTATCAAAA20.1299545159194282No Hit
CGGAAGGATCATTACCACATCTAAAAAACTTCCACGTGAACTGTATCAAA20.1299545159194282No Hit
CGGAAGGATCATTACCACACCAAAAACAACACACGTGAAAATGTACTGTC20.1299545159194282No Hit
CGGAAGGATCGTTACCACACCTAAAAAACTTCCACGTGAACTGTATCAAA20.1299545159194282No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACTGTGTCAAA20.1299545159194282No Hit
CGGAAGGATCATTACCACAGCAGTGGATGTCTAGGCTCTGTCTCTTATAC20.1299545159194282No Hit
CGGAAGGATCATTACCACTCGTCGTCAGCAGTGGATGTCTAGGCTCTGTC20.1299545159194282No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACCGTATCAAA20.1299545159194282No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACTGTATCAAC20.1299545159194282No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)