FastQCFastQC Report
Tue 16 Jan 2024
000000000-LC922_l01_n01_ITS-OOChi682.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LC922_l01_n01_ITS-OOChi682.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5152
Sequences flagged as poor quality0
Sequence length301
%GC43

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC252248.951863354037265No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACTGTATTAAA166032.22049689440994No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACTGTATTAAA350.6793478260869565No Hit
CGGAAGGATCATTACCACACCTAAAAACTTCCACGTGAACTGTATTAAAA330.640527950310559No Hit
CGGAAGGATCATTAACACACCTAAAAACTTTCCACGTGAACCGTATCAAC230.4464285714285714No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAAACGTATCAAC220.42701863354037267No Hit
CGGAAGGATCATTACCACGAGACCAGCAGTGGATGTCTAGGCTCTGTCTC200.38819875776397517No Hit
CGGAAGGATCATTACCACACATAAAAACTTTCCACGTGAACCGTATCAAC190.3687888198757764No Hit
CGGAAGGATCATTACCACACCTAAAAACTATCCACGTGAACCGTATCAAC170.3299689440993789No Hit
CGGAAGGATCATTACCACACATAAAAAACTTCCACGTGAACTGTATTAAA160.3105590062111801No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTCCACGTGAACCGTATCAAC160.3105590062111801No Hit
CGGAAGGATCATTACCACACCTAAGAACTTTCCACGTGAACCGTATCAAC160.3105590062111801No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA160.3105590062111801No Hit
CGGAAGGATCATTACCACCTAAAAAACTTCCACGTGAACTGTATTAAAAC150.2911490683229814No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAAATGTATTAAA150.2911490683229814No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGCGAACCGTATCAAC140.2717391304347826No Hit
CGGAAGGATCATTACCACACCTAGAAACTTTCCACGTGAACCGTATCAAC130.25232919254658387No Hit
CGGAAGGATCATTACCACACCTAAAAGCTTTCCACGTGAACCGTATCAAC130.25232919254658387No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGGACTGTATTAAA120.2329192546583851No Hit
CGGAAGGATCATTACCACCTAAAAACTTTCCACGTGAACCGTATCAACCC120.2329192546583851No Hit
CGGAAGGATCATTACCACACCTAAAAACTTCCCACGTGAACCGTATCAAC120.2329192546583851No Hit
CGGAAGGATCATTACCACACCTAAAAAGCTTCCACGTGAACTGTATTAAA110.21350931677018634No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGCATCAAC100.19409937888198758No Hit
CGGAAGGATCATTACCACCTAAAAACTTTCCACGTGAACCGTATCAACAA100.19409937888198758No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTACCAAC100.19409937888198758No Hit
CGGAAGGATCATTACCACACCTAAAAACTCTCCACGTGAACCGTATCAAC90.17468944099378883No Hit
CGGAAGGATCATTAACACACCTAAAAAACTTCCACGTGAACTGTATTAAA90.17468944099378883No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGGACCGTATCAAC90.17468944099378883No Hit
CGGAAGGATCATTACCACACCTAAAGAACTTCCACGTGAACTGTATTAAA90.17468944099378883No Hit
CGGAAGGATCATTACCACACCTAAAAGACTTCCACGTGAACTGTATTAAA90.17468944099378883No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAGCCGTATCAAC80.15527950310559005No Hit
CGGAAGGATCATTACCACGCCTAAAAACTTTCCACGTGAACCGTATCAAC80.15527950310559005No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCGAC80.15527950310559005No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACCGTATCAAC80.15527950310559005No Hit
CGGAAGGATCATTACCACACCTAAAGACTTTCCACGTGAACCGTATCAAC70.1358695652173913No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAGC70.1358695652173913No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACTGTATTAGA70.1358695652173913No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCGCGTGAACCGTATCAAC70.1358695652173913No Hit
CGGAAGGATCATTACCACACCTAAGAAACTTCCACGTGAACTGTATTAAA70.1358695652173913No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACTGTATTAAG60.11645962732919254No Hit
CGGAAGGATCATTACCACACCCAAAAACTTTCCACGTGAACCGTATCAAC60.11645962732919254No Hit
CGGAAGGATCATTACCACACCTAAAAAACCTCCACGTGAACTGTATTAAA60.11645962732919254No Hit
CGGAAGGATCATTACCACACCTAAAAAACTCCCACGTGAACTGTATTAAA60.11645962732919254No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)