FastQCFastQC Report
Tue 16 Jan 2024
000000000-LC922_l01_n01_ITS-OOChi679.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LC922_l01_n01_ITS-OOChi679.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2941
Sequences flagged as poor quality0
Sequence length301
%GC43

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA152151.71710302618157No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC53418.157089425365523No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTAAACA983.3321999319959197No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACTGTCAAAC742.5161509690581436No Hit
CGGAAGGATCATTAACACACCTAAAAACTTTCCACGTGAACCGTATCAAA602.0401224073444406No Hit
CGGAAGGATCATTACCACACATAAAAACTTTCCACGTGAACCGTATCAAA381.292077524651479No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAAACGTATCAAA210.7140428425705543No Hit
CGGAAGGATCATTAACACACCTAAAAACTTTCCACGTGAACCGTATCAAC200.6800408024481469No Hit
CGGAAGGATCATTACCACCTAAAAACTTTCCACGTGAACCGTATCAAACC170.5780346820809248No Hit
CGGAAGGATCATTACCACACATAAAAACTTTCCACGTGAACCGTATCAAC160.5440326419585175No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAGCCGTATCAAA140.47602856171370284No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATTAAA140.47602856171370284No Hit
CGGAAGGATCATTACCACACCTAAAAAATTTCCACGTGAACCGTATCAAA140.47602856171370284No Hit
CGGAAGGATCATTACCACCGGCAGCAGTGGATGTCTAGGCTCTGTCTCTT130.44202652159129546No Hit
CGGAAGGATCATTACCACTCGTCAGCAGTGGATGTCTAGGCTCTGTCTCT120.40802448146888814No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGCGAACCGTATCAAA120.40802448146888814No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTGTCAAA90.3060183611016661No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGGACCGTATCAAA80.27201632097925876No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGCATCAAA80.27201632097925876No Hit
CGGAAGGATCATTACCACACCTAAGAACTTTCCACGTGAACCGTATCAAA80.27201632097925876No Hit
CGGAAGGATCATTACCACACCTAAAAGCTTTCCACGTGAACCGTATCAAA80.27201632097925876No Hit
CGGAAGGATCATTACCACACATAAAAACTTTCCACGTGAAACGTATCAAA70.23801428085685142No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTTCACGTGAACCGTATCAAA70.23801428085685142No Hit
CGGAAGGATCATTACCACGCCTAAAAACTTTCCACGTGAACCGTATCAAA70.23801428085685142No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTCCACGTGAACCGTATCAAC70.23801428085685142No Hit
CGGAAGGATCATTACCACACCTAAAGACTTTCCACGTGAACCGTATCAAA60.20401224073444407No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTCCACGTGAACCGTATCAAA60.20401224073444407No Hit
CGGAAGGATCATTACCACACAAAAAAACTATCCACGTGAACCGTTAAACA60.20401224073444407No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAAACGTATCAAC60.20401224073444407No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAGC50.17001020061203673No Hit
CGGAAGGATCATTACCACACCTAAAAACTCTCCACGTGAACCGTATCAAA50.17001020061203673No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCGAA50.17001020061203673No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTACCAAA50.17001020061203673No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAGA40.13600816048962938No Hit
CGGAAGGATCATTACCACACCTAAAACTTTCCACGTGAACCGTATCAAAC40.13600816048962938No Hit
CGGAAGGATCATTACCACACCAAAAAACTTTCCACGTGAACCGTAATAAT40.13600816048962938No Hit
CGGAAGGATCATTACCAAACCTAAAAACTTTCCACGTGAACCGTATCAAA40.13600816048962938No Hit
CGGAAGGATCATTACCAAACCTAAAAACTTTCCACGTGAACCGTATCAAC40.13600816048962938No Hit
CGGAAGGATCATTACCACACCTAGAAACTTTCCACGTGAACCGTATCAAA40.13600816048962938No Hit
CGGAAGGATCATTACCCCACCTAAAAACTTTCCACGTGAACCGTATCAAA40.13600816048962938No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTTAACCGTATCAAA40.13600816048962938No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAAACGTTAAACA40.13600816048962938No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCGCGTGAACCGTATCAAA40.13600816048962938No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAG40.13600816048962938No Hit
CGGAAGGATCATTACCACACCTAAAAACTTCCCACGTGAACCGTATCAAA40.13600816048962938No Hit
CGGAAGGATCATTACCACACCTAAAAGCTTTCCACGTGAACCGTATCAAC40.13600816048962938No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGAGAACCGTATCAAA40.13600816048962938No Hit
CGGAAGGAACATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC30.10200612036722204No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAGCCGTATCAAC30.10200612036722204No Hit
CGGAAGGATCATTACCACACCTAAAAACTATCCACGTGAACCGTATCAAA30.10200612036722204No Hit
CGGAAGGATCATAACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA30.10200612036722204No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACTGTCAAACC30.10200612036722204No Hit
CGGAAGAATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA30.10200612036722204No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGGACCGTATCAAC30.10200612036722204No Hit
CGGAAGGATCATTACCACACCTAAAAACTTACCACGTGAACCGTATCAAA30.10200612036722204No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGCATCAAC30.10200612036722204No Hit
CGGAAGGATCATTACCACCTAAAAACTTTCCACGTGAACCGTATCAACCC30.10200612036722204No Hit
CGGAAGGATCATTAACACACCTAAAAAACTTTCCACGTGAACTGTCAAAC30.10200612036722204No Hit
CGGAAGGATCATTACCACACCCAAAAACTTTCCACGTGAACCGTATCAAA30.10200612036722204No Hit
CGGAAGGATCATTACCACACTTAAAAACTTTCCACGTGAACCGTATCAAA30.10200612036722204No Hit
CGGAAGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAAC30.10200612036722204No Hit
CGGAAGGATCATTAACACCGGCAGCAGTGGATGTCTAGGCTCTGTCTCTT30.10200612036722204No Hit
CGGAAGGATTATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC30.10200612036722204No Hit
CGGAAGGATCATTACCACACATAAAAAACTTTCCACGTGAACTGTCAAAC30.10200612036722204No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACTGTATCAAA30.10200612036722204No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)