FastQCFastQC Report
Tue 16 Jan 2024
000000000-LC922_l01_n01_ITS-OOChi678.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LC922_l01_n01_ITS-OOChi678.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7523
Sequences flagged as poor quality0
Sequence length301
%GC45

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT515368.49661039478931No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC6488.613585005981657No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA2142.8446098630865344No Hit
CGGAAGGATCATTACCACACAAAAAACTATCCACGTGAACCACTTTGTAT861.143160973016084No Hit
CGGAAGGATCATTACCACACCAAAAACTATACACGTGAACCACTTTGTAT630.83743187558155No Hit
CGGAAGGATCATTAACACACCAAAAACTATCCACGTGAACCACTTTGTAT590.7842615977668483No Hit
CGGAAGGATCATTACCACACCAAAAAGTATCCACGTGAACCACTTTGTAT540.7177987504984713No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACAACTTTGTAT490.6513359032300944No Hit
CGGAAGGATCATTACCACCAAAAACTATCCACGTGAACCACTTTGTATTG470.6247507643227436No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGGACCACTTTGTAT250.3323142363418849No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCACTTTGTA240.3190216668882095No Hit
CGGAAGGATCATTACCACACCAAGAACTATCCACGTGAACCACTTTGTAT230.3057290974345341No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACCTTGTAT230.3057290974345341No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTCGTAT230.3057290974345341No Hit
CGGAAGGATCATTACCACGCCAAAAACTATCCACGTGAACCACTTTGTAT220.2924365279808587No Hit
CGGAAGGATCATTACCACACCAAAAACTACCCACGTGAACCACTTTGTAT210.27914395852718327No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTCA210.27914395852718327No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTAAACCACTTTGTAT210.27914395852718327No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGCGAACCACTTTGTAT200.2658513890735079No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAGCCACTTTGTAT200.2658513890735079No Hit
CGGAAGGATCATTACCACACCAAAAGCTATCCACGTGAACCACTTTGTAT200.2658513890735079No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCGCGTGAACCACTTTGTAT190.2525588196198325No Hit
CGGAAGGATCATTACCACACCAAAGACTATCCACGTGAACCACTTTGTAT170.22597368071248172No Hit
CGGAAGGATCATTACCACACCGAAAACTATCCACGTGAACCACTTTGTAT170.22597368071248172No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAC150.1993885418051309No Hit
CGGAAGGATTATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT140.18609597235145553No Hit
CGGAAGGATCATTACCACATCAAAAACTATCCACGTGAACCACTTTGTAT140.18609597235145553No Hit
CGGAAGGATCATTACCACACCAAAAACCATCCACGTGAACCACTTTGTAT140.18609597235145553No Hit
CGGAAGGATCATTACCACACTAAAAACTATCCACGTGAACCACTTTGTAT140.18609597235145553No Hit
CGGAAGGATCATACCACACCAAAAACTATCCACGTGAACCACTTTGTATT130.17280340289778012No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTCTGTAT130.17280340289778012No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCACGTGAACCACTTTGTAT120.15951083344410474No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCAATTTGTAT120.15951083344410474No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGTATCAAAC110.14621826399042934No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGCAT110.14621826399042934No Hit
CGGAAGGATCATTACCACACCAAAACTATCCACGTGAACCACTTTGTATT110.14621826399042934No Hit
CGGAAGGATCATTACCACACCAAAAACTGTCCACGTGAACCACTTTGTAT110.14621826399042934No Hit
CGGAAGGATCATTACCATACCAAAAACTATCCACGTGAACCACTTTGTAT100.13292569453675396No Hit
CGGAAGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTATT100.13292569453675396No Hit
CGGAAGGATCATTACCACACCTAAAAACTATCCACGTGAACCACTTTGTA100.13292569453675396No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCGAC100.13292569453675396No Hit
CGGAAGGATCATTACCACACCAGAAACTATCCACGTGAACCACTTTGTAT90.11963312508307855No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCATTTTGTAT90.11963312508307855No Hit
CGGAAGGATCATTACCACGACAGCAGTGGATGTCTAGGCTCTGTCTCTTA90.11963312508307855No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCATGTGAACCACTTTGTAT80.10634055562940316No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)