FastQCFastQC Report
Tue 16 Jan 2024
000000000-LC922_l01_n01_ITS-OOChi677.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LC922_l01_n01_ITS-OOChi677.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1141
Sequences flagged as poor quality0
Sequence length301
%GC42

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA24821.735319894829097No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC14212.445223488168274No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT12811.2182296231376No Hit
CGGAAGGATCATTACCACACCAAAAAAAACTTTCCACGTGAACCGTTGTA807.011393514460999No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTTCCACGTGAACCGTTGTAA756.573181419807186No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAATCTGTACTT524.557405784399649No Hit
CGGAAGGATCATTACCACATCTCCAGCAGTGGATGTCTAGGCTCTGTCTC282.4539877300613497No Hit
CGGAAGGATCATTACCACATCAGCAGTGGATGTCTAGGCTCTGTCTCTTA272.366345311130587No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTTCCACGTGAACCTATACCG232.0157756354075373No Hit
CGGAAGGATCATTACCACGAGACCAGCAGTGGATGTCTAGGCTCTGTCTC211.8404907975460123No Hit
CGGAAGGATCATTACCACGAGACCCAGCAGTGGATGTCTAGGCTCTGTCT181.5775635407537247No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT161.4022787028922No Hit
CGGAAGGATCATTACCACACCTAAAAAACTATCCACGTGAACCGTTAAGC161.4022787028922No Hit
CGGAAGGATCATTACCACAGCAGTGGATGTCTAGGCTCTGTCTCTTATAC151.3146362839614372No Hit
CGGAAGGATCATTACCACACCTAAAACTTTCCACGTGAACCGTATCAAAC131.1393514460999123No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTTCACGTGAACCGTTTAATA121.0517090271691498No Hit
CGGAAGGATCATTACCACACCAAAAAAACTCTCCACGTGAATCTGTACTG60.5258545135845749No Hit
CGGAAGGATCATTACCACTGTCTCTATACACACTGTGCGCGACAGCAGTG60.5258545135845749No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTTGAACA60.5258545135845749No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTTGTAAT30.26292725679228746No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAGCCGTATCAAA30.26292725679228746No Hit
CGGAAGGATCATTACCACACCTAAAAACTATCCACGTGAACCACTTTGTA30.26292725679228746No Hit
CGGAAGGATCATTACCACACCTAAAAACTCTCCACGTGAACCGTATCAAA30.26292725679228746No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGGACCGTATCAAC30.26292725679228746No Hit
CGGAAGGATCATTACCACACCAAAAGAAACTTTCCACGTGAACCGTTGTA30.26292725679228746No Hit
CGGAAGGATCATTACCACACCCAAAAACTTTCCACGTGAACCGTATCAAC30.26292725679228746No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTTGCAA30.26292725679228746No Hit
CGGAAGGATCATTACCACATCTCCAGCAGTGTATGTCTAGGCTCTGTCTC20.175284837861525No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACAACTTTGTAT20.175284837861525No Hit
CGGAAGGATCATTACCACATCTGACCTGCCGACGACAGCAGTGGATGTCT20.175284837861525No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGGACCGTATCAAA20.175284837861525No Hit
CGGAAGGATCATTACCACGAGACCCAGCAGTTGATGTCTAGGCTCTGTCT20.175284837861525No Hit
CGGAAGGATCATTACACACCTAAAAACTTTCCACGTGAACCGTATCAAAC20.175284837861525No Hit
CGGAAGGATCATTACCACACCGAAAAAAACTTTCCACGTGAACCGTTGTA20.175284837861525No Hit
CGGAAGGATCATTAACACACCTAAAAACTTTCCACGTGAACCGTATCAAA20.175284837861525No Hit
CGGAAGGATCATTACCACACCAAAAAAAACTTTCCACGTGGACCGTTGTA20.175284837861525No Hit
GATGAGTCAGCGTCGAACATGCAACATTTATTGCATGATACGTGGCATTT20.175284837861525No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCGCGTGAACCGTATCAAA20.175284837861525No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAAACGTATCAAA20.175284837861525No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAAACGTATCAAC20.175284837861525No Hit
CGGAAGGATCATTACCACATATCCAGCAGTGGATGTCTAGGCTCTGTCTC20.175284837861525No Hit
CGGAAGGATCATTAACACACCAAAAACTATCCACGTGAACCACTTTGTAT20.175284837861525No Hit
CGGAAGGATCATTACCACACCAAAAACTGTCCACGTGAACCACTTTGTAT20.175284837861525No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)