FastQCFastQC Report
Tue 16 Jan 2024
000000000-LC922_l01_n01_ITS-OOChi676.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LC922_l01_n01_ITS-OOChi676.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6276
Sequences flagged as poor quality0
Sequence length301
%GC41

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC317450.573613766730396No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTTCCACGTGAACCTATACCG140822.434671765455704No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT3725.927342256214149No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCTATACCGT1382.198852772466539No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAAACGTATCAAC360.5736137667304015No Hit
CGGAAGGATCATTACCACGAGACCAGCAGTGGATGTCTAGGCTCTGTCTC260.41427660930529No Hit
CGGAAGGATCATTACCACCTAAAAACTTTCCACGTGAACCGTATCAACAA230.36647546207775655No Hit
CGGAAGGATCATTACCACACATAAAAACTTTCCACGTGAACCGTATCAAC230.36647546207775655No Hit
CGGAAGGATCATTACCACACCAAAAAACTTTCCACGTGAACCTATACCGT220.3505417463352454No Hit
CGGAAGGATCATTAACACACCTAAAAACTTTCCACGTGAACCGTATCAAC190.3027405991077119No Hit
CGGAAGGATCATTACCACACCAAAAACAACCCACGTGAAAATGTACTGTC190.3027405991077119No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGGACCGTATCAAC180.28680688336520077No Hit
CGGAAGGATCATTACCACACAAAAAAAACTTTCCACGTGAACCTATACCG170.2708731676226896No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCACTTTGTA160.25493945188017847No Hit
CGGAAGGATCATTACCACACCTAGAAACTTTCCACGTGAACCGTATCAAC160.25493945188017847No Hit
CGGAAGGATCATTACCACACCTAAGAACTTTCCACGTGAACCGTATCAAC160.25493945188017847No Hit
CGGAAGGATCATTACCACGCCTAAAAACTTTCCACGTGAACCGTATCAAC160.25493945188017847No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCGCGTGAACCGTATCAAC150.23900573613766732No Hit
CGGAAGGATCATTACCACACCTAAAAAATTTCCACGTGAACCGTATCAAC140.22307202039515617No Hit
CGGAAGGATCATTACCACACCTAAAAACTCTCCACGTGAACCGTATCAAC130.207138304652645No Hit
CGGAAGGATCATTACCACACCTAAAAACTTCCCACGTGAACCGTATCAAC130.207138304652645No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAAACTGTACTG130.207138304652645No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGTGAACCGTCAGAAAT120.19120458891013384No Hit
CGGAAGGATCATTACCACACCTAAAAGCTTTCCACGTGAACCGTATCAAC120.19120458891013384No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCTATACCG110.1752708731676227No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAGCCGTATCAAC110.1752708731676227No Hit
CGGAAGGATCATTACCAAACCTAAAAACTTTCCACGTGAACCGTATCAAC110.1752708731676227No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTCCACGTGAACCGTATCAAC110.1752708731676227No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCGAC110.1752708731676227No Hit
CGGAAGGATCATTACCACAGCAGTGGATGTCTAGGCTCTGTCTCTTATAC110.1752708731676227No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTACCAAC110.1752708731676227No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTGTCAAC100.15933715742511154No Hit
CGGAAGGATCATTACCACTCCGACCACAGCAGTGGATGTCTAGGCTCTGT100.15933715742511154No Hit
CGGAAGGATCATTAACACACCAAAAAAACTTTCCACGTGAACCTATACCG100.15933715742511154No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA100.15933715742511154No Hit
CGGAAGGATCATTACCACACCTAAAGACTTTCCACGTGAACCGTATCAAC90.14340344168260039No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAGC90.14340344168260039No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGCGAACCGTATCAAC90.14340344168260039No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGCATCAAC90.14340344168260039No Hit
CGGAAGGATCATTACCACACCTAAAAACTCTCCACGTGAACCGTATGAAC90.14340344168260039No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCATTTAAAC80.12746972594008923No Hit
CGGAAGGATCATACCACACCTAAAAACTTTCCACGTGAACCGTATCAACA80.12746972594008923No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTAGGCTCTGTC80.12746972594008923No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTAAACA80.12746972594008923No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATTAAC80.12746972594008923No Hit
CGGAAGGATCATTACCACACCAAAAAAGCTTTCCACGTGAACCTATACCG80.12746972594008923No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCACGTGAACCACTTTGTAT70.11153601019757808No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTTCCACGTGAGCCTATACCG70.11153601019757808No Hit
CGGAAGGATCATTACCACACCGAAAAAACTTTCCACGTGAACCTATACCG70.11153601019757808No Hit
CGGAAGGATCATTACCACACCTAAAACAAATCCACGTGAACCGTTAACTA70.11153601019757808No Hit
CGGAAGGATCATTACCACACCTAAAACTTTCCACGTGAACCGTATCAACA70.11153601019757808No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTCCCACGTGAACCTATACCG70.11153601019757808No Hit
CGGAAGGATCATTACCACTGCAGCAGTGGATGTCTAGGCTCTGTCTCTTA70.11153601019757808No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)