FastQCFastQC Report
Tue 16 Jan 2024
000000000-LC922_l01_n01_ITS-OOChi672.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LC922_l01_n01_ITS-OOChi672.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3789
Sequences flagged as poor quality0
Sequence length301
%GC45

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA121932.1720770651887No Hit
CGGAAGGATCATTACCACACCTAAAAAACTATCCACGTGAACCGTTAAGC57015.043547110055425No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAATCGTTCAATA54614.410134600158353No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC49613.090525204539457No Hit
CGGAAGGATCATTAACACACCTAAAAACTTTCCACGTGAACCGTATCAAA310.8181578252837161No Hit
CGGAAGGATCATTACCACACATAAAAACTTTCCACGTGAACCGTATCAAA240.6334125098970704No Hit
CGGAAGGATCATTACCACTCAGCAGTGGATGTCTAGGCTCTGTCTCTTAT170.4486671945104249No Hit
CGGAAGGATCATTAACACACCTAAAAACTTTCCACGTGAACCGTATCAAC170.4486671945104249No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTAAACA160.422275006598047No Hit
CGGAAGGATCATTACCACAGCAGTGGATGTCTAGGCTCTGTCTCTTATAC160.422275006598047No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATTAAA150.395882818685669No Hit
CGGAAGGATCATTACCACCTAAAAACTTTCCACGTGAACCGTATCAAACC140.36949063077329114No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTACATA140.36949063077329114No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGCATCAAA130.3430984428609132No Hit
CGGAAGGATCATTAACACACCTAAAAAACTATCCACGTGAACCGTTAAGC130.3430984428609132No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGTGAACCGTCAGAAAT130.3430984428609132No Hit
CGGAAGGATCATTACCACACCTAAAAACTCTCCACGTGAACCGTATCAAA120.3167062549485352No Hit
CGGAAGGATCATTACCACACCTAAAAACTTCCCACGTGAACCGTATCAAA120.3167062549485352No Hit
CGGAAGGATCATTACCACACATAAAAAACTATCCACGTGAACCGTTAAGC120.3167062549485352No Hit
CGGAAGGATCATTACCACTCCTAAAAACTTTCCACGTGAATCGTTCAATA120.3167062549485352No Hit
CGGAAGGATCATTACCACACATAAAAACTTTCCACGTGAATCGTTCAATA120.3167062549485352No Hit
CGGAAGGATCATTACCACACCTAAAAGACTATCCACGTGAACCGTTAAGC120.3167062549485352No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAAACGTATCAAA110.2903140670361573No Hit
CGGAAGGATCATTAACACACCTAAAAACTTTCCACGTGAATCGTTCAATA110.2903140670361573No Hit
CGGAAGGATCATTACCACACCTAAAAAATTTCCACGTGAACCGTATCAAA100.26392187912377935No Hit
CGGAAGGATCATTACCACACATAAAAACTTTCCACGTGAACCGTATCAAC100.26392187912377935No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTTCAATA90.23752969121140144No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCGAA90.23752969121140144No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTGTCAAA70.18474531538664557No Hit
CGGAAGGATCATTACCACACCTAAAAGCTTTCCACGTGAACCGTATCAAA70.18474531538664557No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAATCGTTCAGTA70.18474531538664557No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTCCACGTGAATCGTTCAATA70.18474531538664557No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGGACCGTATCAAC70.18474531538664557No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTCCACGTGAACCGTATCAAA70.18474531538664557No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAG70.18474531538664557No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGCGAACCGTATCAAC60.1583531274742676No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT50.13196093956188967No Hit
CGGAAGGATCATTACCACACCTAAAAACTCTCCACGTGAACCGTATCAAC50.13196093956188967No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAAACGTTCAATA50.13196093956188967No Hit
CGGAAGGATCATTACCACACCTAGAAACTTTCCACGTGAACCGTATCAAA50.13196093956188967No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAAACGTATCAAC50.13196093956188967No Hit
CGGAAGGATCATTACCACCTAAAAACTTTCCACGTGAATCGTTCAATATA50.13196093956188967No Hit
CGGAAGGATCATTACCACACCTAAAAACTATCCACGTGAACCGTTAAGCA50.13196093956188967No Hit
CGGAAGGATCATTACCACGCCTAAAAACTTTCCACGTGAACCGTATCAAC50.13196093956188967No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGGACCGTATCAAA50.13196093956188967No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTCCACGTGAACCGTATCAAC50.13196093956188967No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTTAAGCA50.13196093956188967No Hit
GATGAGTCAGCGTCGAACATGCAACATTTATTGCATGATACGTGGCATTT50.13196093956188967No Hit
CGGAAGGATCATTACCACACCTAAAAAACTATCCGCGTGAACCGTTAAGC50.13196093956188967No Hit
CGGAAGGATCATTACCACACCTAAAAAGCTATCCACGTGAACCGTTAAGC40.10556875164951175No Hit
CGGAAGGATCATTACCACACCTAAAGACTTTCCACGTGAATCGTTCAATA40.10556875164951175No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAATCGTCCAATA40.10556875164951175No Hit
CGGAAGGATCATTCCACACCTAAAAACTTTCCACGTGAACCGTATCAAAC40.10556875164951175No Hit
CGGAAGGATCATTACCACCTAAAAAACTATCCACGTGAACCGTTAAGCAA40.10556875164951175No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCGAC40.10556875164951175No Hit
CGGAAGGATCATTACCACACCTAAGAAACTATCCACGTGAACCGTTAAGC40.10556875164951175No Hit
CGGAAGGATCATTACCAAACCTAAAAAACTATCCACGTGAACCGTTAAGC40.10556875164951175No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCGCGTGAACCGTATCAAA40.10556875164951175No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)