FastQCFastQC Report
Tue 16 Jan 2024
000000000-LC922_l01_n01_ITS-OOChi671.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LC922_l01_n01_ITS-OOChi671.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1859
Sequences flagged as poor quality0
Sequence length301
%GC44

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA64234.53469607315761No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC49626.681011296395912No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATCAA21211.403980634749864No Hit
CGGAAGGATCATTAACACACCTAAAAACTTTCCACGTGAACCGTATCAAA331.7751479289940828No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTAGGCTCTGTC261.3986013986013985No Hit
CGGAAGGATCATTACCACACATAAAAACTTTCCACGTGAACCGTATCAAA251.3448090371167294No Hit
CGGAAGGATCATTAACACACCTAAAAACTTTCCACGTGAACCGTATCAAC241.2910166756320602No Hit
CGGAAGGATCATTACCACACATAAAAACTTTCCACGTGAACCGTATCAAC140.7530930607853685No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTAA120.6455083378160301No Hit
CGGAAGGATCATTACCACACATAAAAAACTTTCCACGTGAACCGTATCAA110.591715976331361No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAAACGTATCAAA100.5379236148466917No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAAACGTATCAAC100.5379236148466917No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGCGAACCGTATCAAC80.43033889187735336No Hit
CGGAAGGATCATTACCACGCCTAAAAACTTTCCACGTGAACCGTATCAAA80.43033889187735336No Hit
CGGAAGGATCATTACCACCTAAAAACTTTCCACGTGAACCGTATCAAACC70.37654653039268426No Hit
CGGAAGGATCATTACCACCTAAAAACTTTCCACGTGAACCGTATCAACCC70.37654653039268426No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCAGGTGAACCGTATCAAA70.37654653039268426No Hit
CGGAAGGATCATTAACACACCTAAAAAACTTTCCACGTGAACCGTATCAA70.37654653039268426No Hit
CGGAAGAATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA60.32275416890801506No Hit
CGGAAGGATCATTACCACACCTAAAAACTCTCCACGTGAACCGTATCAAA60.32275416890801506No Hit
CAGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA50.26896180742334586No Hit
CGGAAGGATCATTACCACTCGTCAGCAGTGGATGTCTAGGCTCTGTCTCT50.26896180742334586No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAGCCGTATCAA50.26896180742334586No Hit
CGGAAGGATCATTACCACACCTAGAAACTTTCCACGTGAACCGTATCAAA40.21516944593867668No Hit
CGGAAGGATTATTACCACACCTAAAAAACTTTCCACGTGAACCGTATCAA40.21516944593867668No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCATATCAAA40.21516944593867668No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACAGTATCAA30.16137708445400753No Hit
CGGAAGGAACATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC30.16137708445400753No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAGCCGTATCAAA30.16137708445400753No Hit
CGGAAGGATCATTACCAAACCTAAAAACTTTCCACGTGAACCGTATCAAC30.16137708445400753No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGCGAACCGTATCAAA30.16137708445400753No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTCCACGTGAACCGTATCAAA30.16137708445400753No Hit
CAGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATCAA30.16137708445400753No Hit
CGGAAGGATCATTACCACACCTAAAAAATTTCCACGTGAACCGTATCAAC30.16137708445400753No Hit
CGGAAGGATCATTACCACACCCAAAAACTTTCCACGTGAACCGTATCAAA30.16137708445400753No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAG30.16137708445400753No Hit
CGGAAGGATCATTACCACAGCAGTGGATGTCTAGGCTCTGTCTCTTATAC30.16137708445400753No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCATATCAAC30.16137708445400753No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTACCAAC30.16137708445400753No Hit
CGGAAGGATCATTACCACACCTAAAAACTCTCCACGTGAAACGTATCAAA20.10758472296933834No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGCGAACCGTATCAA20.10758472296933834No Hit
CGGAAGGATCATTACCACCTAAAAACTTTCAACGTGAACCGTATCAAACC20.10758472296933834No Hit
CGGAAGGATCATACCACACCTAAAAACTTTCCACGTGAACCGTATCAACC20.10758472296933834No Hit
CGGAAGGATCATTACCACACCTAAAAACTATCCACGTGAACCGTATCAAA20.10758472296933834No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTGTCAA20.10758472296933834No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCTCGTGAACCGTATCAAA20.10758472296933834No Hit
CGGAAGGATCATTACCAAACCTAAAAACTTTCCACGTGAACCGTATCAAA20.10758472296933834No Hit
CGGAAGGATCATTACCACGCCTAAAAACTTTCCACGTGAACCGTATCAAC20.10758472296933834No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGGACCGTATCAAC20.10758472296933834No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTCCACGTGAACCGTATCAAC20.10758472296933834No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCGAA20.10758472296933834No Hit
CGGAAGGATCATTAACACACATAAAAACTTTCCACGTGAACCGTATCAAC20.10758472296933834No Hit
CGGAAGGATCATTACCACACCTAAAAAATTTCCACGTGAACCGTATCAAA20.10758472296933834No Hit
CGGAAGGATCATTACCACCTAAAAACTTTCCTCGTGAACCGTATCAAACC20.10758472296933834No Hit
TGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA20.10758472296933834No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAATCGTATCAAC20.10758472296933834No Hit
CGGAAGAATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATCAA20.10758472296933834No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCGCGTGAACCGTATCAAA20.10758472296933834No Hit
CGGAAGGATCATTAACACACCTAAAAACTTTCCACGTGAAACGTATCAAA20.10758472296933834No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATCGA20.10758472296933834No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG20.10758472296933834No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACTGTATCAAA20.10758472296933834No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)