FastQCFastQC Report
Tue 16 Jan 2024
000000000-LC922_l01_n01_ITS-OOChi670.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LC922_l01_n01_ITS-OOChi670.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5042
Sequences flagged as poor quality0
Sequence length301
%GC43

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA150929.92859976199921No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAATCTGTACTG87717.393891312971043No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC72014.28004760015867No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT64012.69337564458548No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTTCCACGTGAACCGTTGTAA571.1305037683458945No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTACATA541.0710035700119No Hit
CGGAAGGATCATTAACACACCTAAAAACTTTCCACGTGAACCGTATCAAA260.5156683855612851No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT240.4760015866719556No Hit
CGGAAGGATCATTACCACCTAAAAACTTTCCACGTGAACCGTATCAAACC230.45616818722729074No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAAACGTATCAAA220.43633478778262597No Hit
CGGAAGGATCATTACCACACCAAAAACTATACACGTGAACCACTTTGTAT220.43633478778262597No Hit
CGGAAGGATCATTACCACACAAAAAACTATCCACGTGAACCACTTTGTAT210.41650138833796113No Hit
CGGAAGGATCATTACCACACATAAAAACTTTCCACGTGAACCGTATCAAA210.41650138833796113No Hit
CGGAAGGATCATTACCACACAAAAAAAACTTACCACGTGAATCTGTACTG190.3768345894486315No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAAACGTATCAAC170.33716779055930185No Hit
CGGAAGGATCATTAACACACCAAAAACTATCCACGTGAACCACTTTGTAT170.33716779055930185No Hit
CGGAAGGATCATTACCACATCTGACGCCAGCAGTGGATGTCTAGGCTCTG160.31733439111463707No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATCAA160.31733439111463707No Hit
CGGAAGGATCATTAACACACCTAAAAACTTTCCACGTGAACCGTATCAAC150.29750099166997224No Hit
CGGAAGGATCATTACCACGAGACCAGCAGTGGATGTCTAGGCTCTGTCTC140.2776675922253074No Hit
CGGAAGGATCATTAACACACCAAAAAAACTTACCACGTGAATCTGTACTG130.25783419278064257No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTCCACGTGAACCGTATCAAA120.2380007933359778No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTACCACGTGAATCTGTACTG110.21816739389131298No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTAAACA110.21816739389131298No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACAACTTTGTAT110.21816739389131298No Hit
CGGAAGGATCATTACCACACCAAAAAACTTACCACGTGAATCTGTACTGT110.21816739389131298No Hit
CGGAAGGATCATTACCACACATAAAAACTTTCCACGTGAACCGTATCAAC110.21816739389131298No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGCGAATCTGTACTG90.17850059500198334No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCACTTTGTA90.17850059500198334No Hit
CGGAAGGATCATTACCACGCCTAAAAACTTTCCACGTGAACCGTATCAAA90.17850059500198334No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATAAAC90.17850059500198334No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTACCAAA90.17850059500198334No Hit
CGGAAGGATCATTACCACACCTAAAAACTCTCCACGTGAACCGTATCAAA80.15866719555731854No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAATCTGTACTGT80.15866719555731854No Hit
CGGAAGGATCATTACCACACCTAAAAACTTACCACGTGAATCTGTACTGT80.15866719555731854No Hit
CGGAAGGATCATTACCACCAAAAACTATCCACGTGAACCACTTTGTATTG80.15866719555731854No Hit
CGGAAGGATCATTACCACACCTAAAGACTTTCCACGTGAACCGTATCAAA70.1388337961126537No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCATGTGAACCGTATCAAA70.1388337961126537No Hit
CGGAAGGATCATTACCACACCAAAGACTATCCACGTGAACCACTTTGTAT70.1388337961126537No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAGCCGTATCAAA70.1388337961126537No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTCCACGTGAACCGTATCAAC70.1388337961126537No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCGCGTGAACCGTATCAAA70.1388337961126537No Hit
CGGAAGGATCATTACCACACCTAAAGACTTTCCACGTGAACCGTATCAAC60.1190003966679889No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGGACCACTTTGTAT60.1190003966679889No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGCGAACCGTATCAAA60.1190003966679889No Hit
CGGAAGGATCATTACCACACCTAAAAAATTTCCACGTGAACCGTATCAAA60.1190003966679889No Hit
CGGAAGGATCATTACCAAACCTAAAAACTTTCCACGTGAACCGTATCAAA60.1190003966679889No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGGACCGTATCAAA60.1190003966679889No Hit
CGGAAGGATCATTACCACCTAAAAACTTTCCACGTGAACCGTATCAACAA60.1190003966679889No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)